barSeed - Barley Seed Development Database

Probe ABC00540

Source Contig ABC00540

barSeed

Links

Affymetrix Source Sequence (977 bp)

>ABC00540 977
GTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATTGCGGCAA
CAAGTACGATTGCGCAGCAACAACCATTTCCACAACAACCCATCCCACAACAACCACAAC
CATACCCACAACAACCACAACCATTTCCACAACGACCCTTCCCATCACAACAACCATTTC
CGCAACAACCACCATTTTGGCAACAACAACCAATTCTATCGAAGCAACAACCATGTACAC
CACAACAACCACCACTCCCACAAGGACAACAAGATCAAATGCTTGTGCAAGTACAAATAC
CATTTGTTCATCCATCTATTTTGCAGCAGCTAAACCCATGCAAGGTATTCCTCCAGCAGC
AGTGCAGCCCTGTGGCAATGCCACAACGTATTGCAAGGTCGCAAATGTTGCAGCAGAGCA
GTTGCCATGTGTTGCAGCAACAATGTTGCCAACAACTGCCGCAAATCCCCGAACAATTCC
GCCATGAGGCAGTCCGTGCAATCGTCTACTCTATCATCCTGCAAGAACAACCCCAACAAT
TGGTCCAAGGTGTCTCCCAACCCCAACAACAGTCGCAGCTACAGCAAGTCGGACAATGTT
CTTTCCAACAACCTCAACCACAACAGGGTAAACAACAGCAAGTGCCACAGAGTGTTTTCT
TGCAGCCACACCAGCTAGCTCAGCTTGAGGCGACGGCTTCCATTGCGCTGCGTACCCTAC
CAATGATGTGCAGTGTTAATCTGCCGTTGTACCGCATACTTCCATTCGGCATTGACACGA
GAGTTGGTGTCTAATGATAAGAAAACGTCTCTATAAATATATAGTTGAATCACCGTTGTT
TAATCGAGGTATATGTCGATGTAGAGGTGACAAATAAAGTGTGACACAACCTTATGTGTG
ACCGACCCAGACTTGATGTTTAAATTCTGGAATAAAATATAAATAAAGTTTTAACTAGAC
AAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_22496.1	998	0.0	174 - 971	90	720 / 799	CUST_11194_PI390587928 CUST_22657_PI390587928 CUST_2503_PI390587928 CUST_22851_PI390587928 CUST_37700_PI390587928 CUST_13638_PI390587928 CUST_41660_PI390587928 CUST_13632_PI390587928 CUST_4629_PI390587928 CUST_13627_PI390587928 CUST_22614_PI390587928 CUST_37062_PI390587928 CUST_37704_PI390587928 CUST_13670_PI390587928 CUST_37697_PI390587928 CUST_15916_PI390587928 CUST_4631_PI390587928 CUST_16069_PI390587928 CUST_37662_PI390587928 CUST_7641_PI390587928 CUST_37667_PI390587928 CUST_37671_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
MLOC_30835.1	717	0.0	1 - 628	96	605 / 628	CUST_37669_PI390587928 CUST_40697_PI390587928 CUST_13668_PI390587928 CUST_37063_PI390587928 CUST_22637_PI390587928 CUST_37660_PI390587928 CUST_7655_PI390587928 CUST_7637_PI390587928 CUST_34597_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
MLOC_6381.1	1035	0.0	10 - 884	88	774 / 879	CUST_6741_PI390587928 CUST_11194_PI390587928 CUST_22657_PI390587928 CUST_2503_PI390587928 CUST_37700_PI390587928 CUST_13638_PI390587928 CUST_41660_PI390587928 CUST_31646_PI390587928 CUST_13627_PI390587928 CUST_22614_PI390587928 CUST_7621_PI390587928 CUST_32236_PI390587928 CUST_32375_PI390587928 CUST_13615_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_26608_PI390587928 CUST_40753_PI390587928 CUST_15916_PI390587928 CUST_32897_PI390587928 CUST_3904_PI390587928 CUST_16069_PI390587928 CUST_37662_PI390587928 CUST_7629_PI390587928 CUST_7641_PI390587928 CUST_37667_PI390587928 CUST_32234_PI390587928 CUST_37060_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012
MLOC_22764.1	1083	6e-81	865 - 1056	95	183 / 192	CUST_11194_PI390587928 CUST_22657_PI390587928 CUST_22851_PI390587928 CUST_37700_PI390587928 CUST_13612_PI390587928 CUST_41660_PI390587928 CUST_23494_PI390587928 CUST_13627_PI390587928 CUST_22614_PI390587928 CUST_15916_PI390587928 CUST_16069_PI390587928 CUST_7619_PI390587928 CUST_37667_PI390587928 CUST_7641_PI390587928 CUST_37671_PI390587928 CUST_11910_PI390587928 CUST_37060_PI390587928	ABC00069 ABC00241 ABC00282 ABC00295 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC53012
MLOC_46003.1	1379	0.0	1 - 721	90	652 / 724	CUST_6741_PI390587928 CUST_22657_PI390587928 CUST_13624_PI390587928 CUST_41660_PI390587928 CUST_31646_PI390587928 CUST_13651_PI390587928 CUST_13632_PI390587928 CUST_13627_PI390587928 CUST_22614_PI390587928 CUST_7621_PI390587928 CUST_13671_PI390587928 CUST_32236_PI390587928 CUST_32375_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_13670_PI390587928 CUST_7631_PI390587928 CUST_32897_PI390587928 CUST_7659_PI390587928 CUST_13666_PI390587928 CUST_3904_PI390587928 CUST_16069_PI390587928 CUST_7629_PI390587928 CUST_32234_PI390587928 CUST_13662_PI390587928 CUST_37060_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012
MLOC_75622.1	1651	0.0	915 - 1651	89	661 / 740	CUST_6741_PI390587928 CUST_25329_PI390587928 CUST_37700_PI390587928 CUST_13624_PI390587928 CUST_17015_PI390587928 CUST_31646_PI390587928 CUST_13651_PI390587928 CUST_13632_PI390587928 CUST_1122_PI390587928 CUST_7621_PI390587928 CUST_13671_PI390587928 CUST_32375_PI390587928 CUST_37704_PI390587928 CUST_34593_PI390587928 CUST_22790_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_34191_PI390587928 CUST_3902_PI390587928 CUST_7659_PI390587928 CUST_7629_PI390587928 CUST_3896_PI390587928 CUST_26369_PI390587928 CUST_1125_PI390587928 CUST_7658_PI390587928 CUST_4629_PI390587928 CUST_13625_PI390587928 CUST_32236_PI390587928 CUST_41658_PI390587928 CUST_7618_PI390587928 CUST_37701_PI390587928 CUST_13670_PI390587928 CUST_26608_PI390587928 CUST_40753_PI390587928 CUST_7631_PI390587928 CUST_17013_PI390587928 CUST_32897_PI390587928 CUST_3904_PI390587928 CUST_41697_PI390587928 CUST_11910_PI390587928 CUST_32234_PI390587928 CUST_37060_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012
MLOC_47363.1	407	0.0	1 - 407	100	407 / 407	CUST_6741_PI390587928 CUST_25329_PI390587928 CUST_37700_PI390587928 CUST_17015_PI390587928 CUST_31646_PI390587928 CUST_1122_PI390587928 CUST_7621_PI390587928 CUST_32375_PI390587928 CUST_22790_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_34191_PI390587928 CUST_3902_PI390587928 CUST_7629_PI390587928 CUST_3896_PI390587928 CUST_26369_PI390587928 CUST_1125_PI390587928 CUST_7658_PI390587928 CUST_32236_PI390587928 CUST_41658_PI390587928 CUST_37062_PI390587928 CUST_7618_PI390587928 CUST_13625_PI390587928 CUST_37701_PI390587928 CUST_17013_PI390587928 CUST_32897_PI390587928 CUST_4631_PI390587928 CUST_3904_PI390587928 CUST_41697_PI390587928 CUST_32234_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00815 ABC00822 ABC53012
MLOC_47377.1	720	0.0	102 - 720	86	560 / 648	None	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00815 ABC00822 ABC32263 ABC37919 ABC53012
MLOC_355.1	568	9e-164	1 - 410	92	381 / 414	CUST_25348_PI390587928 CUST_34594_PI390587928 CUST_37660_PI390587928 CUST_13669_PI390587928 CUST_7655_PI390587928 CUST_38544_PI390587928 CUST_13622_PI390587928 CUST_10555_PI390587928 CUST_3874_PI390587928 CUST_13668_PI390587928 CUST_37063_PI390587928 CUST_7653_PI390587928 CUST_22637_PI390587928 CUST_7656_PI390587928 CUST_7637_PI390587928 CUST_13640_PI390587928 CUST_13648_PI390587928 CUST_34597_PI390587928 CUST_4630_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012
MLOC_28499.1	321	7e-150	1 - 321	97	310 / 321	CUST_6741_PI390587928 CUST_25329_PI390587928 CUST_17015_PI390587928 CUST_31646_PI390587928 CUST_1122_PI390587928 CUST_7621_PI390587928 CUST_32375_PI390587928 CUST_13646_PI390587928 CUST_22790_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_34191_PI390587928 CUST_3902_PI390587928 CUST_7629_PI390587928 CUST_3896_PI390587928 CUST_26369_PI390587928 CUST_1125_PI390587928 CUST_7658_PI390587928 CUST_32236_PI390587928 CUST_41658_PI390587928 CUST_37062_PI390587928 CUST_7618_PI390587928 CUST_13625_PI390587928 CUST_37701_PI390587928 CUST_17013_PI390587928 CUST_32897_PI390587928 CUST_4631_PI390587928 CUST_3904_PI390587928 CUST_41697_PI390587928 CUST_32234_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00815 ABC00822 ABC53012
MLOC_25576.1	359	2e-146	1 - 321	96	308 / 321	CUST_6741_PI390587928 CUST_31646_PI390587928 CUST_7621_PI390587928 CUST_32375_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_7629_PI390587928 CUST_32236_PI390587928 CUST_32897_PI390587928 CUST_3904_PI390587928 CUST_32234_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00585 ABC00765 ABC00785 ABC00793 ABC00815 ABC00822 ABC53012
MLOC_65457.1	295	1e-133	1 - 295	96	283 / 295	CUST_6741_PI390587928 CUST_31646_PI390587928 CUST_7621_PI390587928 CUST_32375_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_7629_PI390587928 CUST_32236_PI390587928 CUST_40719_PI390587928 CUST_32897_PI390587928 CUST_3904_PI390587928 CUST_32234_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00585 ABC00711 ABC00765 ABC00785 ABC00793 ABC00815 ABC00822 ABC53012
MLOC_27672.1	236	1e-102	1 - 236	95	225 / 236	CUST_25329_PI390587928 CUST_17015_PI390587928 CUST_1122_PI390587928 CUST_13646_PI390587928 CUST_22790_PI390587928 CUST_34191_PI390587928 CUST_3902_PI390587928 CUST_3896_PI390587928 CUST_26369_PI390587928 CUST_1125_PI390587928 CUST_7658_PI390587928 CUST_37062_PI390587928 CUST_41658_PI390587928 CUST_7618_PI390587928 CUST_13625_PI390587928 CUST_37701_PI390587928 CUST_17013_PI390587928 CUST_4631_PI390587928 CUST_41697_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00815 ABC00822 ABC53012
MLOC_32335.1	339	2e-91	157 - 339	100	183 / 183	CUST_13650_PI390587928 CUST_7643_PI390587928	ABC00301 ABC00502 ABC00523 ABC00540 ABC00567 ABC00793 ABC00811 ABC32949
MLOC_23907.1	277	2e-66	6 - 178	93	164 / 176	None	ABC00241 ABC00282 ABC00295 ABC00540 ABC00815 ABC00822
MLOC_29313.1	265	1e-58	130 - 265	97	132 / 136	None	ABC00241 ABC00282 ABC00523 ABC00524 ABC00540 ABC00815 ABC00822