barSeed - Barley Seed Development Database

Probe CUST_7643_PI390587928

Source Contig U35_211

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7643_PI390587928	Hv_44K_v2	TGACAAATAAAGTGTGACACAACCTTATGTGTGACCGACCCAGACTTGATGTTTAAATTC	867	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.014	0.016	0.191	2.731	5.630	7.365
Raw	59.442	114.457	1438.960	27434.000	21994.367	31399.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32335.1	339	2e-24	192 - 251	100	60 / 60	minus	ABC00301 ABC00502 ABC00523 ABC00540 ABC00567 ABC00793 ABC00811 ABC32949
JLOC1	JLOC1_21110.1	329	8e-25	182 - 241	100	60 / 60	minus
Harvest21	ABC00567	616	3e-25	500 - 559	100	60 / 60	plus	ABC00567
Harvest21	ABC00540	977	3e-25	868 - 927	100	60 / 60	plus	ABC00540
Harvest21	ABC52836	583	1e-23	488 - 547	98	59 / 60	plus
Harvest21	ABC00502	1071	1e-23	966 - 1025	98	59 / 60	plus	ABC00502
Harvest35	U35_211	984	3e-25	868 - 927	100	60 / 60	plus
Harvest35	U35_50595	583	1e-23	488 - 547	98	59 / 60	plus
Harvest35	U35_313	934	1e-23	825 - 884	98	59 / 60	plus

Contig Sequence (984 bp)

>U35_211 984 Hv_44K_v2
GTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATTGCGGCAA
CAAGTACGATTGCGCAGCAACAACCATTTCCACAACAACCCATCCCACAACAACCACAAC
CATACCCACAACAACCACAACCATTTCCACAACGACCCTTCCCATCACAACAACCATTTC
CGCAACAACCACCATTTTGGCAACAACAACCAATTCTATCGAAGCAACAACCATGTACAC
CACAACAACCACCACTCCCACAAGGACAACAAGATCAAATGCTTGTGCAAGTACAAATAC
CATTTGTTCATCCATCTATTTTGCAGCAGCTAAACCCATGCAAGGTATTCCTCCAGCAGC
AGTGCAGCCCTGTGGCAATGCCACAACGTATTGCAAGGTCGCAAATGTTGCAGCAGAGCA
GTTGCCATGTGTTGCAGCAACAATGTTGCCAACAACTGCCGCAAATCCCCGAACAATTCC
GCCATGAGGCAGTCCGTGCAATCGTCTACTCTATCATCCTGCAAGAACAACCCCAACAAT
TGGTCCAAGGTGTCTCCCAACCCCAACAACAGTCGCAGCTACAGCAAGTCGGACAATGTT
CTTTCCAACAACCTCAACCACAACAGGGTAAACAACAGCAAGTGCCACAGAGTGTTTTCT
TGCAGCCACACCAGCTAGCTCAGCTTGAGGCGACGGCTTCCATTGCGCTGCGTACCCTAC
CAATGATGTGCAGTGTTAATCTGCCGTTGTACCGCATACTTCCATTCGGCATTGACACGA
GAGTTGGTGTCTAATGATAAGAAAACGTCTCTATAAATATATAGTTGAATCACCGTTGTT
TAATCGAGGTATATGTCGATGTAGAGGTGACAAATAAAGTGTGACACAACCTTATGTGTG
ACCGACCCAGACTTGATGTTTAAATTCTGGAATAAAATATAAATAAAGTTTTAACTAGAC
AATATTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None