- Probe CUST_13648_PI390587928
- Source Contig U35_314
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13648_PI390587928 | Hv_44K_v2 | GTTGTTCAATCGAGGTATATGTCGATGTAGCGGTGATAAATAAAGTGTCAACCTTATGTA | 1172 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.018 | 0.015 | 0.217 | 2.352 | 4.415 | 6.062 |
| Raw | 191.794 | 257.802 | 4203.056 | 62160.733 | 43400.033 | 66206.467 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_355.1 | 568 | 2e-24 | 287 - 346 | 100 | 60 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012 |
| JLOC1 | JLOC1_226.1 | 512 | 8e-25 | 287 - 346 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52672 | 431 | 3e-25 | 315 - 374 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00793 | 1091 | 3e-25 | 938 - 997 | 100 | 60 / 60 | plus | ABC00793 |
| Harvest21 | ABC00556 | 682 | 3e-25 | 596 - 655 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00549 | 868 | 3e-25 | 778 - 837 | 100 | 60 / 60 | plus | ABC00549 |
| Harvest21 | ABC00523 | 1235 | 3e-25 | 1083 - 1142 | 100 | 60 / 60 | plus | ABC00523 |
| Harvest21 | ABC00305 | 1030 | 3e-25 | 932 - 991 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37418 | 411 | 1e-23 | 309 - 368 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC29810 | 599 | 1e-23 | 469 - 528 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00811 | 560 | 1e-23 | 401 - 460 | 98 | 59 / 60 | plus | ABC00811 |
| Harvest21 | ABC00781 | 1172 | 1e-23 | 1019 - 1078 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00765 | 1240 | 1e-23 | 1152 - 1211 | 98 | 59 / 60 | plus | ABC00765 |
| Harvest21 | ABC00506 | 1202 | 1e-23 | 1055 - 1114 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00301 | 970 | 1e-23 | 824 - 883 | 98 | 59 / 60 | plus | ABC00301 |
| Harvest21 | ABC00259 | 1011 | 1e-23 | 869 - 928 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32949 | 440 | 6e-22 | 309 - 365 | 98 | 56 / 57 | plus | ABC32949 |
| Harvest35 | U35_332 | 559 | 3e-25 | 401 - 460 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_314 | 1235 | 3e-25 | 1173 - 1232 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_215 | 683 | 3e-25 | 596 - 655 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_197 | 1206 | 3e-25 | 1055 - 1114 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30098 | 599 | 1e-23 | 469 - 528 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_207 | 905 | 1e-23 | 830 - 889 | 98 | 59 / 60 | plus |
Contig Sequence (1235 bp)
>U35_314 1235 Hv_44K_v2 GATTGCGCAGCAACAACCACTTCCGCAACAACCCATCCCACAAAAACCACAACCATACCC ACAACAACCCTTCCCACCGCAACAACCATTTCCACAACAACCCGTCCCACAACAACCACA ACCATACCCACAACAACCACAACAACCCTTCCCACCGCAACAACCATTTCCACAACAACC ACCATTTGGGTTACAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCACA ACCATATCCACAACAACCATTCCCACCGCAACAACCATTTCCACAACAACCCGTCCCACA ACAACCACAACCATACCCACAACAACCCTTCCCACCGCAACAACCATTCCCACAACAACC ACAACCATTTCCACAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCACA ACCATTTCCACAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCACAACC ATTTCCCCTACAACCCTTCCCATCACAACAACCATTTCCACAACAACCACCATTTTGGCA ACAACAACCAGTTCTATCGCAGCAACAACCATGTACACAAGAACAAACACCACTCCTACA AGAACAACAAGATCAAATGCTTCTGCAAGTACAAATACCATTTGTTCATCCATCTATTTT GCAGCAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTGGCAATGTC ACAACGTATTGCAAGGTCGCAGATGTTGCAACAGAGCAGTTGCCATGTGTTGCAGCAACA GTGTTGCCAACAACTGCCGCAAATCCCCGAACAACTCCGCCATGAGGCAGTCCGTGCAAT CGTCTACTCTATCGTCCTGCAAGAACAATCCCTACAATTGGTCCAAGGTGTCTCCCAACC CCAACAACAGTCACAACAGCAACAAGTCGGACAATGTTCTTTCCAACAACCTCAACCACA ACAGGGTCAACAACAGCAAGTGCCACAGAGTGTTCTCTTGCAGCCACACCAAATAGCTCA ACTTGAGGCGACAACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAGTGTTAATGT GCCGTTGTACCGCATAGTGCCATTAGCCATTGACACCAGAGTTGGTGTCTAATGATAAGA AAAGGTCTCTAGAAATATATAGTTGAATCACCGTTGTTCAATCGAGGTATATGTCGATGT AGCGGTGATAAATAAAGTGTCAACCTTATGTAAAA
Homology of Contig U35_314 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |