barSeed - Barley Seed Development Database

Probe ABC52892

Source Contig ABC52892

barSeed

Links

Affymetrix Source Sequence (520 bp)

>ABC52892 520
CAAGTTTGGGTCGGTCACACATAAGGTTGTGTGACACTTTATTTGTCACCGGTACATTGA
CATATACCTCGATTAAACAACGGTGATTTAACTATATATTTATAGAGACCTTTTTTTATC
ATTAGACCCCAACTTTTGTGTCAATGCCGAAAGGAAGTATTCGGTAGAACGGCCCATTAA
CCCTGCCCATCATTGGTAGGGTTCGCAGCGCAATGGAAACCGTTGCTTCAAAATTAGGTA
ACTGGAGTGGGTGCAAAAAAACACTTTGTGGCCCTTGCTGTTGTTGACCCTGTTGTGGTT
GAGGTTGTTGGAAAAAACATTGTTCGACCCTTGTGCCGAATTTGGCACGAGGGTCCTTTG
CCGCCTATTTTTAAATACATGTTGCTTTGCCGTCCTGTTTTGGGGTGAGGTTGTAAGCCC
TCGGTGCTTTTTATGTTGCTGTTGAACTGCATCCTTAGTACTTTGTGGAACAAGGATTTT
GGCTAAATTGTTTTGTCCTGGTTAAAAAAAAAAAAAACCT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_30835.1	717	1e-115	254 - 581	90	294 / 328	CUST_13668_PI390587928 CUST_37063_PI390587928 CUST_22637_PI390587928 CUST_37660_PI390587928 CUST_37669_PI390587928 CUST_7655_PI390587928 CUST_7637_PI390587928 CUST_40697_PI390587928 CUST_34597_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
MLOC_355.1	568	2e-92	40 - 362	86	280 / 327	CUST_13622_PI390587928 CUST_25348_PI390587928 CUST_34594_PI390587928 CUST_10555_PI390587928 CUST_3874_PI390587928 CUST_13668_PI390587928 CUST_37063_PI390587928 CUST_7653_PI390587928 CUST_22637_PI390587928 CUST_37660_PI390587928 CUST_13669_PI390587928 CUST_7655_PI390587928 CUST_7656_PI390587928 CUST_7637_PI390587928 CUST_38544_PI390587928 CUST_13640_PI390587928 CUST_13648_PI390587928 CUST_34597_PI390587928 CUST_4630_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012
MLOC_22496.1	998	3e-81	220 - 550	83	277 / 332	CUST_11194_PI390587928 CUST_22657_PI390587928 CUST_2503_PI390587928 CUST_22851_PI390587928 CUST_37700_PI390587928 CUST_13638_PI390587928 CUST_41660_PI390587928 CUST_13632_PI390587928 CUST_4629_PI390587928 CUST_13627_PI390587928 CUST_22614_PI390587928 CUST_37062_PI390587928 CUST_37704_PI390587928 CUST_37697_PI390587928 CUST_13670_PI390587928 CUST_15916_PI390587928 CUST_4631_PI390587928 CUST_16069_PI390587928 CUST_37662_PI390587928 CUST_7641_PI390587928 CUST_37667_PI390587928 CUST_37671_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012