- Probe CUST_4630_PI390587928
- Source Contig U35_24
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4630_PI390587928 | Hv_44K_v2 | TCAACAACAGCAAGTGCCACAGAGTGTTTTCTTGCAGCCACACCAAATAGCTCAACTTGA | 625 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.015 | 0.014 | 0.191 | 2.506 | 5.459 | 7.537 |
| Raw | 143.168 | 212.906 | 3469.961 | 61713.700 | 51139.700 | 77714.467 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_355.1 | 568 | 2e-24 | 81 - 140 | 100 | 60 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012 |
| JLOC1 | JLOC1_226.1 | 512 | 8e-25 | 81 - 140 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34484 | 676 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34324 | 711 | 3e-25 | 606 - 665 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34299 | 678 | 3e-25 | 495 - 554 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34033 | 632 | 3e-25 | 412 - 471 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29810 | 599 | 3e-25 | 263 - 322 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00781 | 1172 | 3e-25 | 813 - 872 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00765 | 1240 | 3e-25 | 946 - 1005 | 100 | 60 / 60 | plus | ABC00765 |
| Harvest21 | ABC00556 | 682 | 3e-25 | 390 - 449 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00549 | 868 | 3e-25 | 572 - 631 | 100 | 60 / 60 | plus | ABC00549 |
| Harvest21 | ABC00531 | 704 | 3e-25 | 572 - 631 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00530 | 1096 | 3e-25 | 753 - 812 | 100 | 60 / 60 | plus | ABC00530 |
| Harvest21 | ABC00523 | 1235 | 3e-25 | 877 - 936 | 100 | 60 / 60 | plus | ABC00523 |
| Harvest21 | ABC00506 | 1202 | 3e-25 | 849 - 908 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00302 | 713 | 3e-25 | 610 - 669 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00301 | 970 | 3e-25 | 618 - 677 | 100 | 60 / 60 | plus | ABC00301 |
| Harvest21 | ABC00259 | 1011 | 3e-25 | 663 - 722 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00211 | 1515 | 3e-25 | 839 - 898 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32949 | 440 | 1e-23 | 100 - 159 | 98 | 59 / 60 | plus | ABC32949 |
| Harvest21 | ABC32763 | 421 | 1e-23 | 70 - 129 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC29837 | 681 | 1e-23 | 625 - 681 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC00811 | 560 | 1e-23 | 195 - 254 | 98 | 59 / 60 | plus | ABC00811 |
| Harvest21 | ABC00793 | 1091 | 1e-23 | 732 - 791 | 98 | 59 / 60 | plus | ABC00793 |
| Harvest21 | ABC00783 | 801 | 1e-23 | 656 - 715 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00757 | 605 | 1e-23 | 496 - 555 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00305 | 1030 | 1e-23 | 726 - 785 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_38357 | 678 | 3e-25 | 495 - 554 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38176 | 632 | 3e-25 | 412 - 471 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30098 | 599 | 3e-25 | 263 - 322 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_318 | 977 | 3e-25 | 761 - 820 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_215 | 683 | 3e-25 | 390 - 449 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_207 | 905 | 3e-25 | 624 - 683 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_204 | 706 | 3e-25 | 572 - 631 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_197 | 1206 | 3e-25 | 849 - 908 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_115 | 711 | 3e-25 | 606 - 665 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_68 | 955 | 3e-25 | 785 - 844 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24 | 729 | 3e-25 | 626 - 685 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_88 | 720 | 4e-24 | 663 - 720 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_332 | 559 | 1e-23 | 195 - 254 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_314 | 1235 | 1e-23 | 967 - 1026 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_303 | 605 | 1e-23 | 496 - 555 | 98 | 59 / 60 | plus |
Contig Sequence (729 bp)
>U35_24 729 Hv_44K_v2 CAAAATCAAGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGCAC TCCTCGCCATTGCGGCAACAAGTACGATTGCACAGCAACAACCATTTCCACAACAACCCA ACCCACAACAACCACAACCATTTCCACAACAACCCTTCCCATCACAACAACCATTTCCGC AACAACCACCATTTTGGCAACAACAACCAATTCTATCGCAGCAACAACCATGTACACCAC AACAAACACCACTCCCACAAGGACAACAAGATCAAATGCTTGTGCAAGTACAAATACCAT TTGTTCATCCATCTATTTTGCAGCAGCTAAACCCATGCAAGGTATTCCTCCAGCAACAGT GCAGCCCTGTGGCAATGTCACAACGTATTGCAAGGTCGCAAATGTTGCAACAGAGCAGTT GCCATGTGTTGCAGCAACAATGTTGCCAACAACTGCCGCAAATCCCCGAACAACTCCGCC ATGAGGCAGTCCGTGCAATCGTCTACTCTATCGTCCTGCAAGAACAATCCCTACAATTGG TCCAAGGTGTCTCCCAACCCCAACAACAGTCACAACAGCAACAAGTCGGACAATGTTCTT TCCAACAACCTCAACCACAACAGGGTCAACAACAGCAAGTGCCACAGAGTGTTTTCTTGC AGCCACACCAAATAGCTCAACTTGAGGCGACAACTTCCATTGCGCTGCGTACCCTACCAA CGATGTGCA
Homology of Contig U35_24 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |