barSeed - Barley Seed Development Database

Probe ABC44727

Source Contig ABC44727

barSeed

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Affymetrix Source Sequence (529 bp)

>ABC44727 529
CAAATCCCCGAACAATTTTGCCATGAGGCAGTCTGTGCAATCGTTTACTCTATCGTCTTG
CAAGAACAACCCCAACGATTGGTCCAAGGTGTTTCCCAACCCCAACAACAGTTGCAGGTA
CAGCAAGTCGGACAATGTTTTTTCCAACAACCTCAACCACAACAGGGTCAACAACAGCAA
GTGCCACAGAGTGTTTTTTTGCAGCCACACCAGCTAGCTCAGCTTGAGGCGACGGTTTCC
ATTGCGCTGCGTACCCTACCAATGATGTGCAGTGTTAATGTGCCGTTGTACCGCATAATT
CCATTCGGCATTGACACGAGAGTTGGTGTTTAATGATAAGAAAAGGTCTCTAGAAATATA
TAGTTGAATAACCGTTGTTGAATCGAGGTATATGTCGATGTAGCGGTGACAAATAAAGTG
TCACACAACCTTATGTGTGATCGACCAAGACTTGATGTTTAAATTTTGGAATAAAATATA
AATAAAGTTTTATCTGGACAATATTCATATTGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_30835.1	717	0.0	128 - 642	98	507 / 515	CUST_13668_PI390587928 CUST_37063_PI390587928 CUST_22637_PI390587928 CUST_37660_PI390587928 CUST_37669_PI390587928 CUST_7655_PI390587928 CUST_7637_PI390587928 CUST_40697_PI390587928 CUST_34597_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
MLOC_22496.1	998	5e-174	162 - 676	88	455 / 516	CUST_11194_PI390587928 CUST_22657_PI390587928 CUST_2503_PI390587928 CUST_22851_PI390587928 CUST_37700_PI390587928 CUST_13638_PI390587928 CUST_41660_PI390587928 CUST_13632_PI390587928 CUST_4629_PI390587928 CUST_13627_PI390587928 CUST_22614_PI390587928 CUST_37062_PI390587928 CUST_37704_PI390587928 CUST_13670_PI390587928 CUST_37697_PI390587928 CUST_15916_PI390587928 CUST_4631_PI390587928 CUST_16069_PI390587928 CUST_37662_PI390587928 CUST_7641_PI390587928 CUST_37667_PI390587928 CUST_37671_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
MLOC_355.1	568	1e-160	1 - 422	91	387 / 426	CUST_13622_PI390587928 CUST_25348_PI390587928 CUST_34594_PI390587928 CUST_10555_PI390587928 CUST_3874_PI390587928 CUST_13668_PI390587928 CUST_37063_PI390587928 CUST_7653_PI390587928 CUST_22637_PI390587928 CUST_37660_PI390587928 CUST_13669_PI390587928 CUST_7656_PI390587928 CUST_7655_PI390587928 CUST_7637_PI390587928 CUST_38544_PI390587928 CUST_13640_PI390587928 CUST_13648_PI390587928 CUST_34597_PI390587928 CUST_4630_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012
MLOC_6381.1	1035	1e-159	10 - 502	87	431 / 493	CUST_6741_PI390587928 CUST_11194_PI390587928 CUST_22657_PI390587928 CUST_2503_PI390587928 CUST_37700_PI390587928 CUST_13638_PI390587928 CUST_41660_PI390587928 CUST_31646_PI390587928 CUST_13627_PI390587928 CUST_22614_PI390587928 CUST_7621_PI390587928 CUST_32236_PI390587928 CUST_32375_PI390587928 CUST_13615_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_26608_PI390587928 CUST_40753_PI390587928 CUST_15916_PI390587928 CUST_32897_PI390587928 CUST_3904_PI390587928 CUST_16069_PI390587928 CUST_37662_PI390587928 CUST_7629_PI390587928 CUST_7641_PI390587928 CUST_37667_PI390587928 CUST_32234_PI390587928 CUST_37060_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012
MLOC_46003.1	1379	4e-155	233 - 721	87	430 / 494	CUST_6741_PI390587928 CUST_22657_PI390587928 CUST_13624_PI390587928 CUST_41660_PI390587928 CUST_31646_PI390587928 CUST_13651_PI390587928 CUST_13632_PI390587928 CUST_13627_PI390587928 CUST_22614_PI390587928 CUST_7621_PI390587928 CUST_13671_PI390587928 CUST_32236_PI390587928 CUST_32375_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_13670_PI390587928 CUST_7631_PI390587928 CUST_32897_PI390587928 CUST_7659_PI390587928 CUST_13666_PI390587928 CUST_3904_PI390587928 CUST_16069_PI390587928 CUST_7629_PI390587928 CUST_32234_PI390587928 CUST_13662_PI390587928 CUST_37060_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012
MLOC_75622.1	1651	1e-114	795 - 1257	83	408 / 492	CUST_6741_PI390587928 CUST_25329_PI390587928 CUST_37700_PI390587928 CUST_13624_PI390587928 CUST_17015_PI390587928 CUST_31646_PI390587928 CUST_13651_PI390587928 CUST_13632_PI390587928 CUST_1122_PI390587928 CUST_7621_PI390587928 CUST_13671_PI390587928 CUST_32375_PI390587928 CUST_37704_PI390587928 CUST_34593_PI390587928 CUST_22790_PI390587928 CUST_13664_PI390587928 CUST_3883_PI390587928 CUST_34191_PI390587928 CUST_3902_PI390587928 CUST_7659_PI390587928 CUST_7629_PI390587928 CUST_3896_PI390587928 CUST_26369_PI390587928 CUST_1125_PI390587928 CUST_7658_PI390587928 CUST_4629_PI390587928 CUST_13625_PI390587928 CUST_32236_PI390587928 CUST_41658_PI390587928 CUST_7618_PI390587928 CUST_37701_PI390587928 CUST_13670_PI390587928 CUST_26608_PI390587928 CUST_40753_PI390587928 CUST_7631_PI390587928 CUST_17013_PI390587928 CUST_32897_PI390587928 CUST_3904_PI390587928 CUST_41697_PI390587928 CUST_11910_PI390587928 CUST_32234_PI390587928 CUST_37060_PI390587928	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012