- Probe CUST_11910_PI390587928
- Source Contig U35_36851
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11910_PI390587928 | Hv_44K_v2 | TCGATGTAGCGGTGACAAATAAAGTGTCACACAACCTTATGTGTGACCAGCCGAAACTAG | 329 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.022 | 0.029 | 0.186 | 2.667 | 6.859 | 12.292 |
| Raw | 61.342 | 126.145 | 758.326 | 15167.910 | 14258.920 | 28263.867 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22764.1 | 1083 | 2e-24 | 37 - 96 | 100 | 60 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00295 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC53012 |
| MLOC | MLOC_75622.1 | 1651 | 3e-21 | 829 - 888 | 97 | 58 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| JLOC1 | JLOC1_15771.1 | 1131 | 8e-25 | 85 - 144 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_50450.1 | 1084 | 2e-21 | 262 - 321 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC32847 | 498 | 3e-25 | 399 - 458 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32534 | 543 | 3e-25 | 435 - 494 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32263 | 455 | 3e-25 | 330 - 389 | 100 | 60 / 60 | plus | ABC32263 |
| Harvest21 | ABC00822 | 1417 | 3e-25 | 1290 - 1349 | 100 | 60 / 60 | plus | ABC00822 |
| Harvest21 | ABC00530 | 1096 | 3e-25 | 968 - 1027 | 100 | 60 / 60 | plus | ABC00530 |
| Harvest21 | ABC00232 | 1132 | 3e-25 | 1005 - 1064 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53012 | 868 | 6e-22 | 770 - 829 | 97 | 58 / 60 | plus | ABC53012 |
| Harvest21 | ABC00815 | 2900 | 6e-22 | 1482 - 1541 | 97 | 58 / 60 | plus | ABC00815 |
| Harvest21 | ABC00560 | 971 | 6e-22 | 843 - 902 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00529 | 804 | 6e-22 | 684 - 743 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00516 | 993 | 8e-21 | 864 - 921 | 97 | 56 / 58 | plus | ABC00516 |
| Harvest21 | ABC00069 | 963 | 8e-21 | 839 - 896 | 97 | 56 / 58 | plus | ABC00069 |
| Harvest35 | U35_36990 | 543 | 3e-25 | 435 - 494 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36851 | 455 | 3e-25 | 330 - 389 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_342 | 1417 | 3e-25 | 1290 - 1349 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_114 | 974 | 3e-25 | 849 - 908 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_337 | 2900 | 6e-22 | 1482 - 1541 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_79 | 1120 | 8e-21 | 994 - 1051 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_25 | 939 | 8e-21 | 839 - 896 | 97 | 56 / 58 | plus |
Contig Sequence (455 bp)
>U35_36851 455 Hv_44K_v2 GAGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGCACTCCTCGC CATTGCGGCAACAAGTACGATTGCACAGCAACAACCATTTCCACAACAACTTGGTCAACC ACAACAGGTACCACAGAGTGTTTTCTTGCAGCCACACCAGATAGCTCAGCTTGAGGCGAC GACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAATGTTAATGTGCCATTGTATGA CATCATGCCATTCGGCGTTGGCACTAGAGTTGGTGTCTAATGATAAGAAAAGGTCTCTAG AGATATATAGTTGGATCACCGTTGTTTAGTCGATGTAGCGGTGACAAATAAAGTGTCACA CAACCTTATGTGTGACCAGCCGAAACTAGTTGTTTAAATTTTGAAATAAAATATAAATAA AGTTCATGAACTTATGATAAAAAAAAAAAAAAAAA
Homology of Contig U35_36851 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |