- Probe CUST_34593_PI390587928
- Source Contig U35_198
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34593_PI390587928 | Hv_44K_v2 | TGCAATCGTCTATTCTATCTTCCTGCAAGAACAACCCCAACAGTTGGTCCAAAGTGTCTC | 485 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.013 | 0.014 | 0.184 | 3.018 | 8.111 | 13.166 |
| Raw | 22.459 | 38.806 | 666.248 | 15258.710 | 15185.880 | 27202.633 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75622.1 | 1651 | 7e-23 | 1163 - 1222 | 98 | 59 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| JLOC1 | JLOC1_50450.1 | 1084 | 4e-23 | 596 - 655 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC00508 | 596 | 3e-25 | 486 - 545 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00815 | 2900 | 1e-23 | 1148 - 1207 | 98 | 59 / 60 | plus | ABC00815 |
| Harvest21 | ABC00560 | 971 | 1e-23 | 509 - 568 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00529 | 804 | 1e-23 | 350 - 409 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00528 | 602 | 1e-23 | 361 - 420 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC53012 | 868 | 6e-22 | 436 - 495 | 97 | 58 / 60 | plus | ABC53012 |
| Harvest35 | U35_198 | 598 | 3e-25 | 486 - 545 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_337 | 2900 | 1e-23 | 1148 - 1207 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_202 | 652 | 1e-23 | 350 - 409 | 98 | 59 / 60 | plus |
Contig Sequence (598 bp)
>U35_198 598 Hv_44K_v2 AACACTCGTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATT GCGGCAACAAGTACGATTGCACCGCAACAACCATTTCCACAACAACCCGTCCCACAACAG CAACAACCATTTCCACAACAACCACCATTTTGGCAACAAAAACCATTTCCACAACAACCA CCATTTGGGCTACAACAACCAATTCTATCGCAGCAACAACCATGTACACCACAACAAACA CCACTCCCACAAGGACAACTGTACCAAACGCTTCTGCAACTACAAATACAATATGTTCAT CCATCTATTTTGCAACAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCT GTGCCAGTGCCACAACGTATTGCTAGGTCGCAAATGTTGCAGCAGAGCAGTTGCCATGTG TTGCAGCAACAATGTTGCCAGCAACTACCCCAAATCCCCGAACAATTCCGTCATGAGGCA ATCCGTGCAATCGTCTATTCTATCTTCCTGCAAGAACAACCCCAACAGTTGGTCCAAAGT GTCTCCCAACCACAACAACAGTTGCAGCAGCAGCAAGTCGGACAATGTTCTTTCCAAC
Homology of Contig U35_198 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |