barSeed - Barley Seed Development Database

Probe CUST_37697_PI390587928

Source Contig U35_79

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37697_PI390587928	Hv_44K_v2	TGTCACACAACCTTATGTGTGACCGGCCCAAACTTGTTGTTTAAATTCTGGAATAAATAT	1017	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.024	0.023	0.217	2.922	7.484	11.564
Raw	92.797	136.273	1229.925	22607.033	21612.067	36808.200

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22496.1	998	2e-24	196 - 255	100	60 / 60	minus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
JLOC1	JLOC1_15597.1	860	8e-25	58 - 117	100	60 / 60	minus
Harvest21	ABC00516	993	3e-25	888 - 947	100	60 / 60	plus	ABC00516
Harvest21	ABC00069	963	3e-25	863 - 922	100	60 / 60	plus	ABC00069
Harvest21	ABC00282	1112	1e-23	1016 - 1075	98	59 / 60	plus	ABC00282
Harvest21	ABC00241	1119	1e-23	1018 - 1077	98	59 / 60	plus	ABC00241
Harvest35	U35_79	1120	3e-25	1018 - 1077	100	60 / 60	plus
Harvest35	U35_25	939	3e-25	863 - 922	100	60 / 60	plus

Contig Sequence (1120 bp)

>U35_79 1120 Hv_44K_v2
GATCAAAACCAAGAAACACTAGTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTG
CACTCCTTGCCATTGCGGCAACAAGTACCATTGCACAACAACAACCATTTCCACAACAAC
CCATCCCACAACAACCACAACCATACCCACAACAACCACAACAACCCTTACCACCGCAAC
AACCATTTCCACAACAAACCATCCCACAACAACCACAACCATACCCACAACAACCACAAC
CATATCCACAACAACCCTTCCCACCGCAACAACCATTTCCACAACAACCACCATTTTGGC
AACAACAACCATTTCCACAACAACCACCATTTGGGCTACAACAACCAATTCTATTGCAGC
AACAACCATGTACACCACAACAAACACCACTCCCACAAGGACAACTGTACCAAATGCTTA
TGCAACTACAAATACCCTATGTTCATCCATCTATTTTGCAACAGCTAAACCCATGCAAGG
TATTCCTCCAGCAGCAATGCAGCCCCGTGCGAATGCCACAACTTATTGCTAGGTCGCAAA
TGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAGCAACTGCCGCAAA
TTCCCGAACAATTCCGCCATGAGGCAATCCGTGCAATCGTCTACTCTATCTTTTTGCAAG
AACAACCCCAACAGTCGGTCCAAGGTGTCTCCCAACCCCAACAACAATTGCAGCAGGAGC
AAGTCGGACAATGTTCTTTCCAACAACCTCAACCACAACAACTTGGTCAACCACAACAGG
TACCACAGAGTGTTTTCTTGCAGCCACACCAGATAGCTCAGCTTGAGGCGACGACTTCCA
TTGCGCTGCGTACCCTACCAACGATGTGCAATGTTAATGTGCCGTTGTTCGACATCATGC
CATTCGGCGTTGGCACCGGAGTTGGCGTCTAATGATAAGAAAAGGTCTCGAGAAATATAT
AGTTGGATCACCGTTGTTTAATCGATGTATATGTCGATGTAGCGGTGACAAATAAAGTGT
CACACAACCTTATGTGTGACCGGCCCAAACTTGTTGTTTAAATTCTGGAATAAATATAAA
TAAAGTTTTATCTAGACAATAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_79 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None