- Probe CUST_7641_PI390587928
- Source Contig U35_213
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7641_PI390587928 | Hv_44K_v2 | AGGAGCAAGTTGGACAATGTTCTTTCCAACAACCTCAACCACAACAACTTGGTCAACCAC | 578 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.014 | 0.014 | 0.163 | 2.903 | 7.054 | 10.084 |
| Raw | 51.001 | 79.810 | 1063.366 | 26536.300 | 24008.967 | 37331.133 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6381.1 | 1035 | 2e-24 | 325 - 384 | 100 | 60 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| MLOC | MLOC_22496.1 | 998 | 7e-23 | 499 - 558 | 98 | 59 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
| MLOC | MLOC_22764.1 | 1083 | 3e-21 | 304 - 363 | 97 | 58 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00295 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC53012 |
| JLOC1 | JLOC1_4154.1 | 1067 | 8e-25 | 348 - 407 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_15597.1 | 860 | 4e-23 | 361 - 420 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_15771.1 | 1131 | 2e-21 | 352 - 411 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC43689 | 629 | 3e-25 | 93 - 152 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00763 | 763 | 4e-24 | 689 - 748 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00548 | 638 | 4e-24 | 581 - 638 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC37919 | 602 | 1e-23 | 362 - 421 | 98 | 59 / 60 | minus | ABC37919 |
| Harvest21 | ABC34461 | 633 | 1e-23 | 506 - 565 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC34137 | 702 | 1e-23 | 638 - 697 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00818 | 1411 | 1e-23 | 967 - 1026 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00795 | 785 | 1e-23 | 722 - 781 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00785 | 999 | 1e-23 | 596 - 655 | 98 | 59 / 60 | plus | ABC00785 |
| Harvest21 | ABC00585 | 920 | 1e-23 | 561 - 620 | 98 | 59 / 60 | plus | ABC00585 |
| Harvest21 | ABC00516 | 993 | 1e-23 | 585 - 644 | 98 | 59 / 60 | plus | ABC00516 |
| Harvest21 | ABC00258 | 597 | 1e-23 | 523 - 582 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00241 | 1119 | 1e-23 | 715 - 774 | 98 | 59 / 60 | plus | ABC00241 |
| Harvest21 | ABC00069 | 963 | 1e-23 | 560 - 619 | 98 | 59 / 60 | plus | ABC00069 |
| Harvest21 | ABC52707 | 645 | 6e-22 | 466 - 525 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32998 | 547 | 6e-22 | 473 - 532 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32847 | 498 | 6e-22 | 132 - 191 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32538 | 494 | 6e-22 | 174 - 233 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00822 | 1417 | 6e-22 | 1023 - 1082 | 97 | 58 / 60 | plus | ABC00822 |
| Harvest21 | ABC00582 | 689 | 6e-22 | 500 - 559 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00543 | 1036 | 6e-22 | 623 - 682 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00524 | 874 | 6e-22 | 754 - 813 | 97 | 58 / 60 | plus | ABC00524 |
| Harvest21 | ABC00296 | 861 | 6e-22 | 584 - 643 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00292 | 684 | 6e-22 | 582 - 641 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00285 | 1008 | 6e-22 | 598 - 657 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00282 | 1112 | 6e-22 | 713 - 772 | 97 | 58 / 60 | plus | ABC00282 |
| Harvest21 | ABC00264 | 895 | 6e-22 | 708 - 767 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00243 | 589 | 6e-22 | 511 - 570 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00240 | 798 | 6e-22 | 578 - 637 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00232 | 1132 | 6e-22 | 738 - 797 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00214 | 698 | 6e-22 | 571 - 630 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_213 | 638 | 3e-25 | 579 - 638 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38477 | 633 | 1e-23 | 506 - 565 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_38249 | 702 | 1e-23 | 638 - 697 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_339 | 1379 | 1e-23 | 967 - 1026 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_319 | 724 | 1e-23 | 596 - 655 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_87 | 602 | 1e-23 | 528 - 587 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_79 | 1120 | 1e-23 | 715 - 774 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_25 | 939 | 1e-23 | 560 - 619 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_37256 | 547 | 6e-22 | 473 - 532 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_342 | 1417 | 6e-22 | 1023 - 1082 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_226 | 691 | 6e-22 | 500 - 559 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_114 | 974 | 6e-22 | 582 - 641 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_81 | 589 | 6e-22 | 511 - 570 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_75 | 1141 | 6e-22 | 735 - 794 | 97 | 58 / 60 | plus |
Contig Sequence (638 bp)
>U35_213 638 Hv_44K_v2 ATCAAAACCGAGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGC ACTCCTCGTCATTGCGGCAACAAGTACGATTGCACAGCAACAACCATTTCCACAACAACC CTTCCCACAACAGCCACAACCATACCCACAACAACCACAACCATATCCACAACAACCATT CCAACCGCAACAACCATTTCCACAACAACCAATTCTATCGCAGCAACAACCATGTACACC ACAACAAACACCACTCCCACAAGGACAACTGTATCAAACGCTTCTGCAACTACAAATACC CTATGTTCATCCATCTATATTGCAACAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCA GTGCAGCCCCGTGCGAATGCCACAACTTATTCCTAGGTTGCAAATGTTGCAGCAGAGCAG TTGCCATGTGTTGCAGCAACAATGTTGCCAGCAACTGCCGCAAATCTCCGAACAATTCCG CCATGAGGCAATCCGTGCAATCGTCTACTCTATCTTTCTGCAAGAACAACCCCAACAGTC GGTCCAAGGTGTATCCCAAACCCAACAACAGTTGCAGCAGGAGCAAGTTGGACAATGTTC TTTCCAACAACCTCAACCACAACAACTTGGTCAACCAC
Homology of Contig U35_213 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |