- Probe CUST_13666_PI390587928
- Source Contig U35_304
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13666_PI390587928 | Hv_44K_v2 | GTCATGAGGCAATCCGTGCAATCGTCTACTCTATCTTCCTGCAAGAACAACTCCAACAAT | 511 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.012 | 0.013 | 0.155 | 2.584 | 6.164 | 9.320 |
| Raw | 55.755 | 97.221 | 1530.693 | 36638.633 | 31409.733 | 52662.200 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_46003.1 | 1379 | 2e-24 | 252 - 311 | 100 | 60 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| JLOC1 | JLOC1_29821.1 | 840 | 8e-25 | 252 - 311 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_29820.1 | 602 | 8e-25 | 292 - 351 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00759 | 830 | 3e-25 | 512 - 571 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00559 | 906 | 3e-25 | 410 - 469 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52905 | 672 | 1e-23 | 416 - 472 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC52828 | 530 | 1e-23 | 377 - 433 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC52706 | 589 | 1e-23 | 434 - 490 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC00805 | 671 | 1e-23 | 491 - 547 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC00789 | 1072 | 1e-23 | 574 - 630 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC00762 | 693 | 1e-23 | 512 - 568 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC00751 | 669 | 1e-23 | 421 - 477 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC53012 | 868 | 8e-21 | 420 - 477 | 97 | 56 / 58 | plus | ABC53012 |
| Harvest21 | ABC00815 | 2900 | 8e-21 | 1132 - 1189 | 97 | 56 / 58 | plus | ABC00815 |
| Harvest21 | ABC00560 | 971 | 8e-21 | 493 - 550 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00529 | 804 | 8e-21 | 334 - 391 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00528 | 602 | 8e-21 | 345 - 402 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00508 | 596 | 8e-21 | 470 - 527 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_304 | 577 | 3e-25 | 512 - 571 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_218 | 599 | 3e-25 | 410 - 469 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_330 | 671 | 1e-23 | 491 - 547 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_321 | 1089 | 1e-23 | 574 - 630 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_312 | 1046 | 1e-23 | 790 - 846 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_306 | 693 | 1e-23 | 512 - 568 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_300 | 669 | 1e-23 | 421 - 477 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_337 | 2900 | 8e-21 | 1132 - 1189 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_202 | 652 | 8e-21 | 334 - 391 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_198 | 598 | 8e-21 | 470 - 527 | 97 | 56 / 58 | plus |
Contig Sequence (577 bp)
>U35_304 577 Hv_44K_v2 AAACCAAGCAACACTAGTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTC CTCGCCATTGCGGCAACAAGTACGATTGCGCAGCAACAACCATTTCCACAACAACCCGTC CCACAAAAACCACAACCATACCCACAACAACCCTTCCCACCGCAACAACCATTTCCACAA CAACCACCATTTTGGCAACAAAAACCATTTCCACAACAACCACCATTTGGGCTACAACAA CCAATTCTATCGCAGCAACAACCATGTACACCACAACAAACACCACTCCCACAAGGACAA CTGTACCAAACGCTTCTGCAACTACAAATACAATATGTTCATCCATCTATTTTGCAACAG CTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTGCCAATGCCACAACGT ATTGCTAGGTCGCAACTGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGC CAACAACTACCCCAAATCCCCGAACAATTCCGTCATGAGGCAATCCGTGCAATCGTCTAC TCTATCTTCCTGCAAGAACAACTCCAACAATCGGTCC
Homology of Contig U35_304 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |