- Probe CUST_13632_PI390587928
- Source Contig U35_321
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13632_PI390587928 | Hv_44K_v2 | TCGATGTATATGTCGACGTAGCGGTGACAAATAAAGTGTCACACAACCTTATGTGTGACC | 936 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.028 | 0.039 | 0.189 | 3.267 | 9.466 | 16.325 |
| Raw | 86.172 | 190.079 | 806.711 | 18902.400 | 21028.533 | 39373.700 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75622.1 | 1651 | 7e-23 | 841 - 900 | 98 | 59 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| MLOC | MLOC_46003.1 | 1379 | 7e-23 | 615 - 674 | 98 | 59 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| MLOC | MLOC_22496.1 | 998 | 7e-23 | 232 - 291 | 98 | 59 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
| JLOC1 | JLOC1_50450.1 | 1084 | 4e-23 | 274 - 333 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_29821.1 | 840 | 4e-23 | 615 - 674 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_15597.1 | 860 | 4e-23 | 94 - 153 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC52785 | 505 | 3e-25 | 60 - 119 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00789 | 1072 | 3e-25 | 937 - 996 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00752 | 548 | 3e-25 | 427 - 486 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00211 | 1515 | 3e-25 | 1051 - 1110 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53012 | 868 | 1e-23 | 758 - 817 | 98 | 59 / 60 | plus | ABC53012 |
| Harvest21 | ABC00815 | 2900 | 1e-23 | 1470 - 1529 | 98 | 59 / 60 | plus | ABC00815 |
| Harvest21 | ABC00560 | 971 | 1e-23 | 831 - 890 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00559 | 906 | 1e-23 | 773 - 832 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00529 | 804 | 1e-23 | 672 - 731 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00516 | 993 | 1e-23 | 852 - 911 | 98 | 59 / 60 | plus | ABC00516 |
| Harvest21 | ABC52836 | 583 | 6e-22 | 464 - 523 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00502 | 1071 | 6e-22 | 942 - 1001 | 97 | 58 / 60 | plus | ABC00502 |
| Harvest21 | ABC00282 | 1112 | 6e-22 | 980 - 1039 | 97 | 58 / 60 | plus | ABC00282 |
| Harvest21 | ABC00069 | 963 | 6e-22 | 827 - 886 | 97 | 58 / 60 | plus | ABC00069 |
| Harvest21 | ABC44727 | 531 | 8e-21 | 90 - 147 | 97 | 56 / 58 | minus | ABC44727 |
| Harvest21 | ABC43689 | 629 | 8e-21 | 361 - 418 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC37919 | 602 | 8e-21 | 96 - 153 | 97 | 56 / 58 | minus | ABC37919 |
| Harvest21 | ABC00818 | 1411 | 8e-21 | 1235 - 1292 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00785 | 999 | 8e-21 | 864 - 921 | 97 | 56 / 58 | plus | ABC00785 |
| Harvest21 | ABC00585 | 920 | 8e-21 | 829 - 886 | 97 | 56 / 58 | plus | ABC00585 |
| Harvest35 | U35_321 | 1089 | 3e-25 | 937 - 996 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_301 | 548 | 3e-25 | 427 - 486 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_337 | 2900 | 1e-23 | 1470 - 1529 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_79 | 1120 | 1e-23 | 982 - 1041 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_50595 | 583 | 6e-22 | 464 - 523 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_313 | 934 | 6e-22 | 801 - 860 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_25 | 939 | 6e-22 | 827 - 886 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_339 | 1379 | 8e-21 | 1235 - 1292 | 97 | 56 / 58 | plus |
Contig Sequence (1089 bp)
>U35_321 1089 Hv_44K_v2 GTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTGGCCATTGCGGCAA CAAGTACGATTGCGCAGCAACAACCACTTCCGCAACAACCATACCCACAACAACCACAAC CATATCCACAACAACCCTTCCCACCGCAACAACCATTTCCACAACAACCCGTCCCACAAC AACCACAACCATACCCACAACAACCACAACAACCCTTCCCACCGCAACAACCATTTCCAC AACAACCACCATTTTGGCAACAAAAACCATTTCCACAACAACCACCATTTGGGCTACAAC AACCAATTCTATCGCAGCAACAACCATGTACACCACAACAAACACCACTCCCACAAGGAC AACTGTACCAAACGCTTCTGCAACTACAAATACAATATGTTCATCCATCTATTTTGCAAC AGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTGCCAATGCCACAAC GTATTGCTAGGTCGCAACTGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTT GCCAACAACTTCCCCAAATCCCCGAACAATTCCGTCATGAGGCAATCCGTGCAATCGTCT ACTCTATCTTCCTGCAAGAACAACTCCAACTATCGGTCCAAGGTGTATCCCAACCCCAAC AACAGTTGGGGCAGCAGCAAGTCGGACAATGTTCTTTCCAACAACCTCAACCACAACAAG TTGGCCAACAACAACAGGTACCACAGAGTGCTTTCTTGCAGCCACACCAGATAGCTCAGC TTGAGGCGACGACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAGTGTTAATGTGC CGTTGTACAGGATCCTGCGAGGCGTTGGTCCCAGTGTTGGTGTCTAATGATAAGAAAAGG TCTCCAGAAATATATAGCTGGATCACCGTTGTTTAATCGATGTATATGTCGACGTAGCGG TGACAAATAAAGTGTCACACAACCTTATGTGTGACCGGGCCAAACTAGTTGTTTAAATTC TAAAATAAAATATAAATAAAGTTCATGATGACTACCTGAAAAGTTTCTAAACAAAAAAAA AAAAAAAAA
Homology of Contig U35_321 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |