- Probe CUST_7631_PI390587928
- Source Contig U35_218
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7631_PI390587928 | Hv_44K_v2 | GTCGGACAATGTTCTTTCCAACAACCTCAACCACAACAAGTTGGCCAACAACAACAGGTA | 516 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.013 | 0.012 | 0.135 | 2.334 | 5.028 | 7.281 |
| Raw | 88.987 | 119.684 | 1786.887 | 43985.900 | 34187.267 | 54442.267 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_46003.1 | 1379 | 2e-24 | 359 - 418 | 100 | 60 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| MLOC | MLOC_75622.1 | 1651 | 7e-23 | 1072 - 1131 | 98 | 59 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| JLOC1 | JLOC1_29821.1 | 840 | 8e-25 | 359 - 418 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_29820.1 | 602 | 8e-25 | 185 - 244 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_50450.1 | 1084 | 4e-23 | 505 - 564 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC52905 | 672 | 3e-25 | 523 - 582 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00805 | 671 | 3e-25 | 598 - 657 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00789 | 1072 | 3e-25 | 681 - 740 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00762 | 693 | 3e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00751 | 669 | 3e-25 | 528 - 587 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00559 | 906 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00815 | 2900 | 1e-23 | 1239 - 1298 | 98 | 59 / 60 | plus | ABC00815 |
| Harvest21 | ABC00529 | 804 | 1e-23 | 441 - 500 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00528 | 602 | 1e-23 | 452 - 511 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00560 | 971 | 5e-23 | 600 - 658 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC53012 | 868 | 6e-22 | 527 - 586 | 97 | 58 / 60 | plus | ABC53012 |
| Harvest35 | U35_330 | 671 | 3e-25 | 598 - 657 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_321 | 1089 | 3e-25 | 681 - 740 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_312 | 1046 | 3e-25 | 897 - 956 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_306 | 693 | 3e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_300 | 669 | 3e-25 | 528 - 587 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_218 | 599 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_337 | 2900 | 1e-23 | 1239 - 1298 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_202 | 652 | 1e-23 | 441 - 500 | 98 | 59 / 60 | plus |
Contig Sequence (599 bp)
>U35_218 599 Hv_44K_v2 TGAAAACGAAGCAACACTAGTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCA CTCCTCGCCATTGCGGCAACAAGTACGATTGCGCAGCAACAACCATTTCCACAACAACCA CCATTTGGGCTACAACAACCAATTCTATCGCAGCAACAACCATGTACACCACAACAAACA CCACTCCCACAAGGACAACTGTACCAACCGCTTCTGCAACTACAAATACAATATGTTCAT CCATCTATTTTGCAACAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCT GTGCCAATGCCACAACGTATCGCTAGGTCGCAAATGTTGCAGCAGAGCAGTTGCCATGTG TTGCAGGAACAATGTTGCCAACAACTGCCCCAAATCCCCGAACAATTCCGTCATGAGGCA ATCCGTGCAATCGTCTACTCTATCTTCCTGCAAGAACAACTCCAACAATCGGTCCAAGGT GTCTCCCAACCCCAACAACAGTTGGGGCAGCAGCAAGTCGGACAATGTTCTTTCCAACAA CCTCAACCACAACAAGTTGGCCAACAACAACAGGTACCACAGAGTGCTTTCTTGCAGCC
Homology of Contig U35_218 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |