- Probe CUST_10555_PI390587928
- Source Contig U35_68
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10555_PI390587928 | Hv_44K_v2 | TTAATGTGCCGTTGTACCGCATAGTGCCATTAGCCATTGACACCAGAGTTGGTGTCTAAT | 891 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.016 | 0.014 | 0.196 | 2.173 | 4.165 | 5.654 |
| Raw | 363.269 | 484.195 | 8409.583 | 127084.133 | 90594.767 | 136799.633 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_355.1 | 568 | 2e-24 | 188 - 247 | 100 | 60 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012 |
| JLOC1 | JLOC1_226.1 | 512 | 8e-25 | 188 - 247 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52672 | 431 | 3e-25 | 216 - 275 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34484 | 676 | 3e-25 | 567 - 626 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34299 | 678 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34033 | 632 | 3e-25 | 519 - 578 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29810 | 599 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00811 | 560 | 3e-25 | 302 - 361 | 100 | 60 / 60 | plus | ABC00811 |
| Harvest21 | ABC00793 | 1091 | 3e-25 | 839 - 898 | 100 | 60 / 60 | plus | ABC00793 |
| Harvest21 | ABC00781 | 1172 | 3e-25 | 920 - 979 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00765 | 1240 | 3e-25 | 1053 - 1112 | 100 | 60 / 60 | plus | ABC00765 |
| Harvest21 | ABC00556 | 682 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00549 | 868 | 3e-25 | 679 - 738 | 100 | 60 / 60 | plus | ABC00549 |
| Harvest21 | ABC00530 | 1096 | 3e-25 | 860 - 919 | 100 | 60 / 60 | plus | ABC00530 |
| Harvest21 | ABC00523 | 1235 | 3e-25 | 984 - 1043 | 100 | 60 / 60 | plus | ABC00523 |
| Harvest21 | ABC00506 | 1202 | 3e-25 | 956 - 1015 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00305 | 1030 | 3e-25 | 833 - 892 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00301 | 970 | 3e-25 | 725 - 784 | 100 | 60 / 60 | plus | ABC00301 |
| Harvest21 | ABC00259 | 1011 | 3e-25 | 770 - 829 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32949 | 440 | 4e-24 | 207 - 266 | 98 | 59 / 60 | plus | ABC32949 |
| Harvest21 | ABC37418 | 411 | 1e-23 | 210 - 269 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_38357 | 678 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38176 | 632 | 3e-25 | 519 - 578 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30098 | 599 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_332 | 559 | 3e-25 | 302 - 361 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_318 | 977 | 3e-25 | 868 - 927 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_314 | 1235 | 3e-25 | 1074 - 1133 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_215 | 683 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_207 | 905 | 3e-25 | 731 - 790 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_197 | 1206 | 3e-25 | 956 - 1015 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_68 | 955 | 3e-25 | 892 - 951 | 100 | 60 / 60 | plus |
Contig Sequence (955 bp)
>U35_68 955 Hv_44K_v2 GATCAAAACCAAGCAACACTAGTTAATACCAATCCATCATGAAGACCTTCCTCATCTTTG CACTCCTCGCCATTGTGGCAACAAGTACCATTGCACAACAACAACCATACCCACAACAAC CACAACCATTTCCACAACAACCCATCCCACAACAACCACAACCATTTCCACAACAACCAC AACCATTTCCACAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCACAAC CATTTCCGCAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCACAACCAT TTCCACAACAACCCTTCCCATCACAACAACCATTTCCACAACAACCACCATTTTGGCAAC AACAACCAGTTCTATCGCAGCAACAACCATGTACACAAGACCAAACACCACTCCTACAAG AACAACAAGATCAAATGCTTCTGCAAGTACAAATACCATTTGTTCATCCATCTATTTTGC AGCAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTGGCAATGTCTC AACGTATTGCAAGGTCGCAAATGTTGCAACAGAGCAGTTGCCATGTGTTGCAGCAACAAT GTTGCCAACAACTGCCGCAAATCCCCGAACAAATCCGCCATGAGGCAGTCCGTGCAATCG TCTACTCTATCGTCCTGCAAGAACAACCCCTACAATTGGTCCAAGGTGTCTCCCAACCCC AACAACAGTCACAACAGCAACAAGTCGGACAATGTTCTTTCCAACAACCTCAACCACAAC AGGGTCAACAACAGCAAGTGCCACAGAGTGTTTTCTTGCAGCCACACCAAATAGCTCAAC TTGAGGCGACAGCTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAGTGTTAATGTGC CGTTGTACCGCATAGTGCCATTAGCCATTGACACCAGAGTTGGTGTCTAATGATA
Homology of Contig U35_68 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |