- Probe CUST_13662_PI390587928
- Source Contig U35_306
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13662_PI390587928 | Hv_44K_v2 | TTTCCAACAACCTCAACCACAACAAGTTGGCCAACAACAACAGGTACCACAGAGTGATTT | 632 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.035 | 0.037 | 0.181 | 4.311 | 16.374 | 28.420 |
| Raw | 33.480 | 56.534 | 243.628 | 7982.080 | 11527.080 | 21912.100 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_46003.1 | 1379 | 7e-23 | 373 - 432 | 98 | 59 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| JLOC1 | JLOC1_29821.1 | 840 | 4e-23 | 373 - 432 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_29820.1 | 602 | 4e-23 | 171 - 230 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC00762 | 693 | 3e-25 | 633 - 692 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52905 | 672 | 1e-23 | 537 - 596 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00805 | 671 | 1e-23 | 612 - 671 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00789 | 1072 | 1e-23 | 695 - 754 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00751 | 669 | 1e-23 | 542 - 601 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00559 | 906 | 1e-23 | 531 - 590 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00752 | 548 | 2e-21 | 189 - 244 | 98 | 55 / 56 | plus | |
| Harvest35 | U35_306 | 693 | 3e-25 | 633 - 692 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_330 | 671 | 1e-23 | 612 - 671 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_321 | 1089 | 1e-23 | 695 - 754 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_312 | 1046 | 1e-23 | 911 - 970 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_300 | 669 | 1e-23 | 542 - 601 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_218 | 599 | 1e-23 | 531 - 590 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_301 | 548 | 2e-21 | 189 - 244 | 98 | 55 / 56 | plus |
Contig Sequence (693 bp)
>U35_306 693 Hv_44K_v2 AAACCAAGCAACACTAGTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTC CTGGCCATTGCGGCAACAAGTACGATTGCGCAGCAACAACCACTTCCGCAACAACCCATC CCACAAAAACCACAACCATACCCACAACAACCCTTCCCACCGCAACAACCATTTCCACAA CAACCCGTCCCACAACAACAAAAACCATTTCCACAACAACCACCATTTGGGCTACAACAA CCAATTCTATCGCAGCAACAACCATGTACACCACAACAAACACCACTCCCACAAGGACAA CTGTACCAAACGCTTCTGGAACTACAAATACAATATGTTCATCCATCTATTTTGCAACAG CTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTGCCAATGCCACAACGT ATTGCTAGGTCGCAACTGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGC CAACAACTTCCCCAAATCCCCGAACAATTCCGTCATGAGGCAATCCGTGCAATCGTCTAC TCTATCTTCCTGCAAGAACAACTCCAACTATCGGTCCAAGGTGTATCCCAACCCCAACAA CAGTTGGGGCAGCAGCAAGTCGGACAATGTTCTTTCCAACAACCTCAACCACAACAAGTT GGCCAACAACAACAGGTACCACAGAGTGATTTC
Homology of Contig U35_306 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |