- Probe CUST_11194_PI390587928
- Source Contig U35_38477
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11194_PI390587928 | Hv_44K_v2 | AACAACTTGGTCAAGCACAACAGGTACCACAAAGTGTTTTCTTGCAGCCACACCAGATAG | 547 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.017 | 0.017 | 0.177 | 3.062 | 9.832 | 16.381 |
| Raw | 24.544 | 40.656 | 436.265 | 10330.533 | 12571.807 | 22943.567 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22764.1 | 1083 | 3e-21 | 262 - 321 | 97 | 58 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00295 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC53012 |
| MLOC | MLOC_22496.1 | 998 | 3e-21 | 457 - 516 | 97 | 58 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
| MLOC | MLOC_6381.1 | 1035 | 3e-21 | 283 - 342 | 97 | 58 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| JLOC1 | JLOC1_15771.1 | 1131 | 2e-21 | 310 - 369 | 97 | 58 / 60 | minus | |
| JLOC1 | JLOC1_15597.1 | 860 | 2e-21 | 319 - 378 | 97 | 58 / 60 | minus | |
| JLOC1 | JLOC1_4154.1 | 1067 | 2e-21 | 306 - 365 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC37919 | 602 | 3e-25 | 320 - 379 | 100 | 60 / 60 | minus | ABC37919 |
| Harvest21 | ABC34461 | 633 | 3e-25 | 548 - 607 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00818 | 1411 | 3e-25 | 1009 - 1068 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00585 | 920 | 3e-25 | 603 - 662 | 100 | 60 / 60 | plus | ABC00585 |
| Harvest21 | ABC43689 | 629 | 6e-22 | 135 - 194 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32847 | 498 | 6e-22 | 174 - 233 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32534 | 543 | 6e-22 | 210 - 269 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32263 | 455 | 6e-22 | 105 - 164 | 97 | 58 / 60 | plus | ABC32263 |
| Harvest21 | ABC00822 | 1417 | 6e-22 | 1065 - 1124 | 97 | 58 / 60 | plus | ABC00822 |
| Harvest21 | ABC00785 | 999 | 6e-22 | 638 - 697 | 97 | 58 / 60 | plus | ABC00785 |
| Harvest21 | ABC00582 | 689 | 6e-22 | 542 - 601 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00543 | 1036 | 6e-22 | 665 - 724 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00524 | 874 | 6e-22 | 796 - 855 | 97 | 58 / 60 | plus | ABC00524 |
| Harvest21 | ABC00516 | 993 | 6e-22 | 627 - 686 | 97 | 58 / 60 | plus | ABC00516 |
| Harvest21 | ABC00296 | 861 | 6e-22 | 626 - 685 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00292 | 684 | 6e-22 | 624 - 683 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00285 | 1008 | 6e-22 | 640 - 699 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00264 | 895 | 6e-22 | 750 - 809 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00241 | 1119 | 6e-22 | 757 - 816 | 97 | 58 / 60 | plus | ABC00241 |
| Harvest21 | ABC00240 | 798 | 6e-22 | 620 - 679 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00232 | 1132 | 6e-22 | 780 - 839 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00214 | 698 | 6e-22 | 613 - 672 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00069 | 963 | 6e-22 | 602 - 661 | 97 | 58 / 60 | plus | ABC00069 |
| Harvest35 | U35_38477 | 633 | 3e-25 | 548 - 607 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_339 | 1379 | 3e-25 | 1009 - 1068 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36990 | 543 | 6e-22 | 210 - 269 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_36851 | 455 | 6e-22 | 105 - 164 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_342 | 1417 | 6e-22 | 1065 - 1124 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_319 | 724 | 6e-22 | 638 - 697 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_226 | 691 | 6e-22 | 542 - 601 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_114 | 974 | 6e-22 | 624 - 683 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_79 | 1120 | 6e-22 | 757 - 816 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_75 | 1141 | 6e-22 | 777 - 836 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_25 | 939 | 6e-22 | 602 - 661 | 97 | 58 / 60 | plus |
Contig Sequence (633 bp)
>U35_38477 633 Hv_44K_v2 GGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGCACTCCTCGTCATTGCGGCA ACAAGTACGATTGCACAGCAACAACCATTTCCACAACAACCCTTCCCACAACAGCCACAA CCATACCCACAACAACCACAACCATATCCACAACAACCATGTACACCACAACAAACACCA CTCCCACAAGGACAACTGTATCAAACGCTTCTGCAACTACAAATACCCTATGTTCATCCA TCTATATTGCAACAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCCGTG CGAATGCCACAACTTATTGCTAGGTTGCAAATGTTGCAGCAGAGCAGTTGCCATGTGTTG CAGCAACAATGTTGCCAGCAACTGCCGCAAATCTCCGAACAATTCCGCCATGAGGCAATC CGTGCAATCGTCTACTCTATCTTTCTGCAAGAACAACCCCAACAGTCGGTCCAAGGTGTA TCCCAAACCCAACAACAGTTGCAGCAGGAGCAAGTTGGACAATGTTCTTTCCAACAACCT CAACCACAACAACTTGGTCAAGCACAACAGGTACCACAAAGTGTTTTCTTGCAGCCACAC CAGATAGCTCAGCTTGAGGCGACGACTTCCATT
Homology of Contig U35_38477 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |