- Probe CUST_13640_PI390587928
- Source Contig U35_318
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13640_PI390587928 | Hv_44K_v2 | CACCAGAGTTGGTGTCTAATGATAAGAAAAGGTATCTAGAAATATATAGTTGAATCACCG | 907 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.071 | 0.043 | 0.469 | 4.147 | 11.116 | 21.137 |
| Raw | 10.079 | 7.396 | 100.257 | 1093.452 | 1188.478 | 2608.567 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_355.1 | 568 | 7e-23 | 228 - 287 | 98 | 59 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012 |
| JLOC1 | JLOC1_226.1 | 512 | 4e-23 | 228 - 287 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC37418 | 411 | 3e-25 | 250 - 309 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34484 | 676 | 3e-25 | 607 - 666 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00781 | 1172 | 3e-25 | 960 - 1019 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00259 | 1011 | 3e-25 | 810 - 869 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52672 | 431 | 1e-23 | 256 - 315 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC34033 | 632 | 1e-23 | 559 - 618 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC29810 | 599 | 1e-23 | 410 - 469 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00811 | 560 | 1e-23 | 342 - 401 | 98 | 59 / 60 | plus | ABC00811 |
| Harvest21 | ABC00793 | 1091 | 1e-23 | 879 - 938 | 98 | 59 / 60 | plus | ABC00793 |
| Harvest21 | ABC00765 | 1240 | 1e-23 | 1093 - 1152 | 98 | 59 / 60 | plus | ABC00765 |
| Harvest21 | ABC00556 | 682 | 1e-23 | 537 - 596 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00549 | 868 | 1e-23 | 719 - 778 | 98 | 59 / 60 | plus | ABC00549 |
| Harvest21 | ABC00523 | 1235 | 1e-23 | 1024 - 1083 | 98 | 59 / 60 | plus | ABC00523 |
| Harvest21 | ABC00506 | 1202 | 1e-23 | 996 - 1055 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00305 | 1030 | 1e-23 | 873 - 932 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00301 | 970 | 1e-23 | 765 - 824 | 98 | 59 / 60 | plus | ABC00301 |
| Harvest21 | ABC32949 | 440 | 6e-22 | 247 - 305 | 97 | 57 / 59 | plus | ABC32949 |
| Harvest21 | ABC32763 | 421 | 6e-22 | 217 - 276 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_318 | 977 | 3e-25 | 908 - 967 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38176 | 632 | 1e-23 | 559 - 618 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_30098 | 599 | 1e-23 | 410 - 469 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_332 | 559 | 1e-23 | 342 - 401 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_314 | 1235 | 1e-23 | 1114 - 1173 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_215 | 683 | 1e-23 | 537 - 596 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_207 | 905 | 1e-23 | 771 - 830 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_197 | 1206 | 1e-23 | 996 - 1055 | 98 | 59 / 60 | plus |
Contig Sequence (977 bp)
>U35_318 977 Hv_44K_v2 ACACTAGTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTGGCCATTG CGGCAACAAGTACGATTGCGCAGCAACAACCACTTCCGCAACAACCCATCCCACAAAAAC CACAACCATACCCACAACAACCCTTCCCACCGCAACAACCATTTCCACAACAACCCGTCC CACAACAACCACAACCATACCCACAACAACCACAACAACCCTTCCCACCGCAACAACCAT TTCCACAACAACCACCATTTGGGTTACAACAACCCATCCCACAACAACCACAACCATACC CAGCACAGCAACAACCATACCCACAACAACCACAACCATTTCCCCAACAACCCTTCCCAT CACAACAACCATTTCCGCAACAACCACCATTTTGGCGACAACAAGATCAAATGCTTGTGC AAGTACAAATACCATTTGTTCATCCATCTATTTTGCAGCAGCTAAACCCATGCAAGGTAT TCCTCCAGCAGCAGTGCAGCCCTGTGGCAATGTCACAACGTATTGCAAGGTCGCAAATGT TGCAACAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAACAACTGCCGCAAATCC CCGAACAACTCCGCCATGAGGCAGTCCGTGCAATCGTCTACTCTATCGTCCTGCAAGAAC AATCCCTACAATTGGTCCAAGGTGTCTCCCAACCCCAACAACAGTCACAAAAGCAACAAG TCGGACAATGTTCTTTCCAACAACCTCAACCACAACAGGGTCAACAACAGCAAGTGCCAC AGAGTGTTTTCTTGCAGCCACACCAAATAGCTCAACTTGAGGCGACAACTTCCATTGCGC TGCGTACCCTACCAACGATGTGCAGTGTTAATGTGCCGTTGTACCGCATAGTGCCATTAG CCATTGACACCAGAGTTGGTGTCTAATGATAAGAAAAGGTATCTAGAAATATATAGTTGA ATCACCGTTGTTCAATC
Homology of Contig U35_318 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |