- Probe CUST_7659_PI390587928
- Source Contig U35_202
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7659_PI390587928 | Hv_44K_v2 | TTTCCAACAACCTCAACCACAACAAGTTGGTCAACAACAACAGGTACCGCAGAGTGCTTT | 454 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.021 | 0.025 | 0.234 | 3.979 | 13.189 | 23.184 |
| Raw | 27.235 | 49.123 | 435.150 | 9948.513 | 12613.170 | 24333.733 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75622.1 | 1651 | 2e-24 | 1058 - 1117 | 100 | 60 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| MLOC | MLOC_46003.1 | 1379 | 3e-21 | 373 - 432 | 97 | 58 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| JLOC1 | JLOC1_50450.1 | 1084 | 8e-25 | 491 - 550 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_29821.1 | 840 | 2e-21 | 373 - 432 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_29820.1 | 602 | 2e-21 | 171 - 230 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC00815 | 2900 | 3e-25 | 1253 - 1312 | 100 | 60 / 60 | plus | ABC00815 |
| Harvest21 | ABC00529 | 804 | 3e-25 | 455 - 514 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00528 | 602 | 3e-25 | 466 - 525 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53012 | 868 | 1e-24 | 542 - 600 | 100 | 59 / 59 | plus | ABC53012 |
| Harvest21 | ABC00560 | 971 | 1e-23 | 614 - 673 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC52905 | 672 | 6e-22 | 537 - 596 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00805 | 671 | 6e-22 | 612 - 671 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00789 | 1072 | 6e-22 | 695 - 754 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00751 | 669 | 6e-22 | 542 - 601 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00559 | 906 | 6e-22 | 531 - 590 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_337 | 2900 | 3e-25 | 1253 - 1312 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_202 | 652 | 3e-25 | 455 - 514 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_330 | 671 | 6e-22 | 612 - 671 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_321 | 1089 | 6e-22 | 695 - 754 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_312 | 1046 | 6e-22 | 911 - 970 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_300 | 669 | 6e-22 | 542 - 601 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_218 | 599 | 6e-22 | 531 - 590 | 97 | 58 / 60 | plus |
Contig Sequence (652 bp)
>U35_202 652 Hv_44K_v2 GTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATTGCGGCAA CAAGTACGATTGCGCAGCAACAACCATGTACACCACAACAAACACCACTCCCACAAGGAC AACTGTACCAAACGCTTCTGCAACTACAAATACAATATGTTCATCCATCTATTTTGCAAC AGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTGCCAGTGCCACAAC GTATTGCTAGGTCGCAAATGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTT GCCAGCAACTACCCCAAATCCCCGAACAATTCCGTCATGAGGCAATCCGTGCAATCGTCT ATTCTATCTTCCTGCAAGAACAACCCCAACAGTTGGTCCAAGGTGTCTCCCAACCACAAC AACAGTTGCAGCAGCAGCAAGTCGGACAATGTTCTTTCCAACAACCTCAACCACAACAAG TTGGTCAACAACAACAGGTACCGCAGAGTGCTTTCTTGCAGCCACACCAGATAGCTCAGC TTGAGGCGACGACTTCCATTGCGCTGCGTACCCTACCAATGATGTGCAGTGTTAATGTGC CGTTGTACAGGATCCTGCGAGGCGTTGGCCCCAGTGTTGGTGTCTAATGATA
Homology of Contig U35_202 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |