- Probe CUST_13622_PI390587928
- Source Contig U35_332
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13622_PI390587928 | Hv_44K_v2 | GTGTCAACCTTATGTATGACCGGCCCAAACTTCATGTTTAAATCCTGGAATAAAATATAA | 444 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.017 | 0.013 | 0.169 | 2.351 | 4.323 | 5.938 |
| Raw | 181.826 | 239.770 | 3339.555 | 63899.967 | 43796.300 | 65895.367 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_355.1 | 568 | 7e-23 | 331 - 390 | 98 | 59 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012 |
| JLOC1 | JLOC1_226.1 | 512 | 4e-23 | 331 - 390 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32949 | 440 | 6e-22 | 350 - 409 | 97 | 58 / 60 | plus | ABC32949 |
| Harvest21 | ABC29810 | 599 | 6e-22 | 513 - 572 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00811 | 560 | 6e-22 | 445 - 504 | 97 | 58 / 60 | plus | ABC00811 |
| Harvest21 | ABC00793 | 1091 | 6e-22 | 982 - 1041 | 97 | 58 / 60 | plus | ABC00793 |
| Harvest21 | ABC00523 | 1235 | 6e-22 | 1127 - 1186 | 97 | 58 / 60 | plus | ABC00523 |
| Harvest21 | ABC00506 | 1202 | 6e-22 | 1099 - 1158 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00301 | 970 | 6e-22 | 868 - 927 | 97 | 58 / 60 | plus | ABC00301 |
| Harvest21 | ABC00259 | 1011 | 6e-22 | 913 - 972 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC52844 | 174 | 8e-21 | 86 - 143 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_332 | 559 | 3e-25 | 445 - 504 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30098 | 599 | 6e-22 | 513 - 572 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_197 | 1206 | 6e-22 | 1099 - 1158 | 97 | 58 / 60 | plus |
Contig Sequence (559 bp)
>U35_332 559 Hv_44K_v2 TAATACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATTGTGGCAACA AGTACCATTGCACAGCAACAACCATACCCACAACAACCACAACCATTTCCACAACAACCC ATCCTACAACAACCACAACCATACCCACAACAAGTCGGACAATGTTCTTTCCAACAACCT CAACCACAACAGGGTCAACAACAGCAAGTGCCACAGAGTGTTCTCTTGCAGCCACACCAA ATAGCTCAACTTGAGGCGACAACTTCCATTGCGCTGCGTACCCTACCAACGATGTGTAGT GTTAATGTGCCGTTGTACCGCATAGTGCCATTAGCCATTGACACCAGAGTTGGTGTCTAA TGATAAGAAAAGGTCTCTAGAAATATATAGTTGAATCACCGTTGTTCAATCGAGGTATAT GTCGATGTAGCGGTGATAAATAAAGTGTCAACCTTATGTATGACCGGCCCAAACTTCATG TTTAAATCCTGGAATAAAATATAAATAAAGTTTTATCTAGACAATATTCAAAAAAAAAAA AAAAAAAAAAAAAAAAAAA
Homology of Contig U35_332 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |