barSeed - Barley Seed Development Database

Probe CUST_13615_PI390587928

Source Contig U35_339

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13615_PI390587928	Hv_44K_v2	CAAATAAAGTGTCACACAATCTTATGTGTGAACGGCCCAAACTAGTTGTTTAAATTCTGA	1261	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.015	0.013	0.170	2.841	6.493	9.667
Raw	40.142	55.762	933.164	21204.900	18594.933	30014.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6381.1	1035	2e-24	30 - 89	100	60 / 60	minus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012
JLOC1	JLOC1_4154.1	1067	8e-25	53 - 112	100	60 / 60	minus
Harvest21	ABC37919	602	3e-25	67 - 126	100	60 / 60	minus	ABC37919
Harvest21	ABC00818	1411	3e-25	1262 - 1321	100	60 / 60	plus
Harvest21	ABC00785	999	1e-23	891 - 950	98	59 / 60	plus	ABC00785
Harvest35	U35_339	1379	3e-25	1262 - 1321	100	60 / 60	plus

Contig Sequence (1379 bp)

>U35_339 1379 Hv_44K_v2
ATGTAAAGTGAATAAGGTGAGTCATGCATACCAAACCTCGGGATTTCTATACTTTGTGTA
TGATCATATGCACAACTAAAAAGCAACTTTGATTATCAATTCAAAAGTACGCTTGTAGCT
TGTGCAACCTAACACAATGTACCAAAAATCCATTTGCAAAACATCCTAACACAATTGTTA
AAGCTGATGCAAAGAAAGAAAGAGATGAAGCCCTGGCTACTATAAATAGGCATGTAGTAT
AAAGATCATCACAGGCACGAGGATCAAAACCAAGAAACACTAGTTAACACCAATCCACTA
TGAAGACCTTCCTCATCTTTGCACTCCTCGTCATTGCGGCAACAAGTACGATTGCACAGC
AACAACCATTTCCACAACAACCCTTCCCACAACAGCCACAACCATACCCACAACAACCAC
AACCATATCCACAACAACCATTCCAACCGCAACAACCATTTCCACAACAAACCATCCCAC
AACAACCACAACCATATCCACAACAACCCTTCCCACCGCAACAAGAATTTCCACAACAAC
CACCATTTTGGCCACAACAACCATTTCCACAGCAACCACCATTTGGGCTACAACAACCAA
TTCTATCGCAGCAACAACCATGTACACCACAACAAACACCACTCCCACAAGGACAACTGT
ATCAAACGCTTCTGCAACTACAAATACCCTATGTTCATCCATCTATATTGCAACAGCTAA
ACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCCGTGCGAATGCCACAACTTATTG
CTAGGTTGCAAATGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAGC
AACTGCCGCAAATCTCCGAACAATTCCGCCATGAGGCAATCCGTGCAATCGTCTACTCTA
TCTTTCTGCAAGAACAACCCCAACAGTCGGTCCAAGGTGTATCCCAAACCCAACAACAGT
TGCAGCAGGAGCAAGTTGGACAATGTTCTTTCCAACAACCTCAACCACAACAACTTGGTC
AAGCACAACAGGTACCACAAAGTGTTTTCTTGCAGCCACACCAGATAGCTCAGCTTGAGG
CGACGACTTCCATTGCGCTGCGTACCCTACCAAGGATGTGCAATGTTAATGTGCCATTGT
ACGACATCATGCCACCCGACTTTTGGCACTAGAGTTGATGTCTAATGATAAGAAAAGGTC
TCTAGAAATATATAGTTGGATCACCGTTGTTTAGTCGATGTATATGTCGATGTAGCGGTG
ACAAATAAAGTGTCACACAATCTTATGTGTGAACGGCCCAAACTAGTTGTTTAAATTCTG
AAATAAAATATAAATAAAGTTCATGACGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None