- Probe CUST_13670_PI390587928
- Source Contig U35_301
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13670_PI390587928 | Hv_44K_v2 | ATGTATATGTCGACGTAGCGGTGACAAATAAAGTGTCACACAACCTTATGTGTGACCGGG | 429 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.024 | 0.037 | 0.185 | 3.092 | 8.707 | 14.447 |
| Raw | 76.561 | 179.298 | 802.157 | 18265.500 | 19453.167 | 35117.433 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75622.1 | 1651 | 3e-22 | 839 - 897 | 98 | 58 / 59 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| MLOC | MLOC_22496.1 | 998 | 3e-22 | 230 - 288 | 98 | 58 / 59 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
| MLOC | MLOC_46003.1 | 1379 | 3e-21 | 618 - 674 | 98 | 56 / 57 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| JLOC1 | JLOC1_50450.1 | 1084 | 1e-22 | 272 - 330 | 98 | 58 / 59 | minus | |
| JLOC1 | JLOC1_15597.1 | 860 | 1e-22 | 92 - 150 | 98 | 58 / 59 | minus | |
| JLOC1 | JLOC1_29821.1 | 840 | 2e-21 | 618 - 674 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC52785 | 505 | 3e-25 | 63 - 122 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00789 | 1072 | 3e-25 | 940 - 999 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00752 | 548 | 3e-25 | 430 - 489 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00211 | 1515 | 3e-25 | 1054 - 1113 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53012 | 868 | 5e-23 | 761 - 819 | 98 | 58 / 59 | plus | ABC53012 |
| Harvest21 | ABC00815 | 2900 | 5e-23 | 1473 - 1531 | 98 | 58 / 59 | plus | ABC00815 |
| Harvest21 | ABC00560 | 971 | 5e-23 | 834 - 892 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC00529 | 804 | 5e-23 | 675 - 733 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC00516 | 993 | 5e-23 | 855 - 913 | 98 | 58 / 59 | plus | ABC00516 |
| Harvest21 | ABC00559 | 906 | 6e-22 | 776 - 832 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC52836 | 583 | 2e-21 | 469 - 524 | 98 | 55 / 56 | plus | |
| Harvest21 | ABC00502 | 1071 | 2e-21 | 947 - 1002 | 98 | 55 / 56 | plus | ABC00502 |
| Harvest21 | ABC00282 | 1112 | 2e-21 | 983 - 1041 | 97 | 57 / 59 | plus | ABC00282 |
| Harvest21 | ABC00069 | 963 | 2e-21 | 833 - 888 | 98 | 55 / 56 | plus | ABC00069 |
| Harvest35 | U35_321 | 1089 | 3e-25 | 940 - 999 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_301 | 548 | 3e-25 | 430 - 489 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_337 | 2900 | 5e-23 | 1473 - 1531 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_79 | 1120 | 5e-23 | 985 - 1043 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_50595 | 583 | 2e-21 | 469 - 524 | 98 | 55 / 56 | plus | |
| Harvest35 | U35_313 | 934 | 2e-21 | 806 - 861 | 98 | 55 / 56 | plus | |
| Harvest35 | U35_25 | 939 | 2e-21 | 833 - 888 | 98 | 55 / 56 | plus |
Contig Sequence (548 bp)
>U35_301 548 Hv_44K_v2 CAAGCAACACTAGTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTGG CCATTGCGGCAACAAGTACGATTGCGCAGCAACAACCACTTCCGCAACAACCCATCCCAC AAAAACCACAACCATACCCACAACAACCCTTCCCACCGCAACAACCATTTCCACAACAAC CCGTCCCACAACAACCTCAACCACAACAAGTTGGCCAACAACAACAGGTACCACAGAGTG CTTTCTTGCAGCCACACCAGATAGCTCAGCTTGAGGCGACGACTTCCATTGCGCTGCGTA CCCTACCAACGATGTGCAGTGTTAATGTGCCGTTGTACAGGATCCTGCGAGGCGTTGGTC CCAGTGTTGGTGTCTAATGATAAGAAAAGGTCTCCAGAAATATATAGCTGGATCACCGTT GTTTAATCGATGTATATGTCGACGTAGCGGTGACAAATAAAGTGTCACACAACCTTATGT GTGACCGGGCCAAACTAGTTGTTTAAATTCTAAAATAAAATATAAATAAAGTTCATGATG ACTACCTG
Homology of Contig U35_301 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |