- Probe CUST_38544_PI390587928
- Source Contig U35_30098
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38544_PI390587928 | Hv_44K_v2 | GTGACAAATAAAGTGTCAACCTTATGTATGACCGGCCCAAACTTGATGTTTAAATTCTGG | 500 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.018 | 0.015 | 0.188 | 2.402 | 4.553 | 6.134 |
| Raw | 205.956 | 281.466 | 3758.051 | 65741.800 | 46708.600 | 68933.300 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_355.1 | 568 | 3e-21 | 319 - 378 | 97 | 58 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012 |
| JLOC1 | JLOC1_226.1 | 512 | 2e-21 | 319 - 378 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32949 | 440 | 3e-25 | 338 - 397 | 100 | 60 / 60 | plus | ABC32949 |
| Harvest21 | ABC29810 | 599 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00811 | 560 | 3e-25 | 433 - 492 | 100 | 60 / 60 | plus | ABC00811 |
| Harvest21 | ABC00301 | 970 | 3e-25 | 856 - 915 | 100 | 60 / 60 | plus | ABC00301 |
| Harvest21 | ABC52672 | 431 | 1e-23 | 347 - 406 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00793 | 1091 | 1e-23 | 970 - 1029 | 98 | 59 / 60 | plus | ABC00793 |
| Harvest21 | ABC00523 | 1235 | 1e-23 | 1115 - 1174 | 98 | 59 / 60 | plus | ABC00523 |
| Harvest21 | ABC00506 | 1202 | 1e-23 | 1087 - 1146 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00305 | 1030 | 1e-23 | 964 - 1023 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00259 | 1011 | 1e-23 | 901 - 960 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC37833 | 196 | 6e-22 | 49 - 108 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC37418 | 411 | 6e-22 | 341 - 400 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC52844 | 174 | 8e-21 | 77 - 131 | 98 | 54 / 55 | plus | |
| Harvest35 | U35_30098 | 599 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_197 | 1206 | 1e-23 | 1087 - 1146 | 98 | 59 / 60 | plus |
Contig Sequence (599 bp)
>U35_30098 599 Hv_44K_v2 ACCAAGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGCACTCCT CGTCATTGCGGCAACAAGTACGATTGCACAGCAACAACCATTTCCACAACAGCCACAACC ATACCCACAACAACCACAACCATATCCGCAACAACCATTTCCACAACAAACCATCCCACA ACAACCACAACCAACCCCAACAACAGTCACAACAGCAACAAGTCGGACAATGTTCTTTCC AACAACCTCAACCACAACAGGGTCAACAACAGCAAGTGCCACAGAGTGTTTTCTTGCAGC CACACCAAATAGCTCAACTTGAGGCGACAGCTTCCATTGCGCTGCGTACCCTACCAACGA TGTGCAGTGTTAATGTGCCGTTGTACCGCATAGTGCCATTAGCCATTGACACCAGAGTTG GTGTCTAATGATAAGAAAAGGTCTCTAGAAATATATAGTTGAATCACCGTTGTTCAATCG AGGTATATGTCGATGTAGCGGTGACAAATAAAGTGTCAACCTTATGTATGACCGGCCCAA ACTTGATGTTTAAATTCTGGAATAAAATATAAATAAAGTTTTATCTAAAAAAAAAAAAA
Homology of Contig U35_30098 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |