- Probe CUST_37667_PI390587928
- Source Contig U35_84
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37667_PI390587928 | Hv_44K_v2 | AGTTGCAGCAGGAGCAAGTTGGACAATGTTCTTTCCAACAACCTCAACCACAACAACTTG | 641 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.014 | 0.014 | 0.163 | 2.735 | 6.700 | 10.203 |
| Raw | 37.824 | 60.876 | 875.820 | 20699.767 | 18677.167 | 31176.800 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6381.1 | 1035 | 2e-24 | 334 - 393 | 100 | 60 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| MLOC | MLOC_22496.1 | 998 | 9e-22 | 508 - 565 | 98 | 57 / 58 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
| MLOC | MLOC_22764.1 | 1083 | 3e-21 | 313 - 372 | 97 | 58 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00295 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC53012 |
| JLOC1 | JLOC1_4154.1 | 1067 | 8e-25 | 357 - 416 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_15597.1 | 860 | 5e-22 | 370 - 427 | 98 | 57 / 58 | minus | |
| JLOC1 | JLOC1_15771.1 | 1131 | 2e-21 | 361 - 420 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC43689 | 629 | 3e-25 | 84 - 143 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37919 | 602 | 3e-25 | 371 - 430 | 100 | 60 / 60 | minus | ABC37919 |
| Harvest21 | ABC34461 | 633 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34137 | 702 | 3e-25 | 629 - 688 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00818 | 1411 | 3e-25 | 958 - 1017 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00585 | 920 | 3e-25 | 552 - 611 | 100 | 60 / 60 | plus | ABC00585 |
| Harvest21 | ABC00258 | 597 | 3e-25 | 514 - 573 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00252 | 701 | 3e-25 | 642 - 701 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00763 | 763 | 4e-24 | 680 - 739 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00795 | 785 | 1e-23 | 713 - 772 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00785 | 999 | 1e-23 | 587 - 646 | 98 | 59 / 60 | plus | ABC00785 |
| Harvest21 | ABC00769 | 617 | 5e-23 | 559 - 617 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC00548 | 638 | 2e-22 | 577 - 631 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC00516 | 993 | 2e-22 | 578 - 635 | 98 | 57 / 58 | plus | ABC00516 |
| Harvest21 | ABC00241 | 1119 | 2e-22 | 708 - 765 | 98 | 57 / 58 | plus | ABC00241 |
| Harvest21 | ABC00069 | 963 | 2e-22 | 553 - 610 | 98 | 57 / 58 | plus | ABC00069 |
| Harvest21 | ABC32998 | 547 | 6e-22 | 464 - 523 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32847 | 498 | 6e-22 | 123 - 182 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00822 | 1417 | 6e-22 | 1014 - 1073 | 97 | 58 / 60 | plus | ABC00822 |
| Harvest21 | ABC00582 | 689 | 6e-22 | 491 - 550 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00524 | 874 | 6e-22 | 745 - 804 | 97 | 58 / 60 | plus | ABC00524 |
| Harvest21 | ABC00296 | 861 | 6e-22 | 575 - 634 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00292 | 684 | 6e-22 | 573 - 632 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00264 | 895 | 6e-22 | 699 - 758 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00243 | 589 | 6e-22 | 502 - 561 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00240 | 798 | 6e-22 | 569 - 628 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00232 | 1132 | 6e-22 | 729 - 788 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00214 | 698 | 6e-22 | 562 - 621 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32538 | 494 | 8e-21 | 167 - 224 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_38477 | 633 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38249 | 702 | 3e-25 | 629 - 688 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_339 | 1379 | 3e-25 | 958 - 1017 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_213 | 638 | 3e-25 | 570 - 629 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_87 | 602 | 3e-25 | 519 - 578 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_84 | 701 | 3e-25 | 642 - 701 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_319 | 724 | 1e-23 | 587 - 646 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_309 | 617 | 5e-23 | 559 - 617 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_79 | 1120 | 2e-22 | 708 - 765 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_25 | 939 | 2e-22 | 553 - 610 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_37256 | 547 | 6e-22 | 464 - 523 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_226 | 691 | 6e-22 | 491 - 550 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_114 | 974 | 6e-22 | 573 - 632 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_81 | 589 | 6e-22 | 502 - 561 | 97 | 58 / 60 | plus |
Contig Sequence (701 bp)
>U35_84 701 Hv_44K_v2 GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAAACC AAGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGCACTCCTCGT CATTGCGGCAACAAGTACGATTGCACAGCAACAACCATTTCCACAACAACCCTTCCCACA ACAGCCACAACCATACCCACAACAACCACAACCATATCCACAACAACCATTCCAACCGCA ACAACCATTTCCACAGCAACCACCATTTGGGCTACAACAACCAATTCTATCGCAGCAACA ACCATGTACACCACAACAAACACCACTCCCACAAGGACAACTGTATCAAACGCTTCTGCA ACTACAAATACCCTATGTTCATCCATCTATATTGCAACAGCTAAACCCATGCAAGGTATT CCTCCAGCAGCAGTGCAGCCCCGTGCGAATGCCACAACTTATTGCTAGGTTGCAAATGTT GCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAGCAACTGCCGCAAATCTC CGAACAATTCCGCCATGAGGCAATCCGTGCAATCGTCTACTCTATCTTTCTGCAAGAACA ACCCCAACAGTCGGTCCAAGGTGTATCCCAAACCCAACAACAGTTGCAGCAGGAGCAAGT TGGACAATGTTCTTTCCAACAACCTCAACCACAACAACTTG
Homology of Contig U35_84 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |