- Probe CUST_40697_PI390587928
- Source Contig U35_50663
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40697_PI390587928 | Hv_44K_v2 | CGGCATTGACACGAGAGTTGGTGTCTAATGATAAGAAAAGGTCTCTATAAATATATAGTT | 449 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.012 | 0.012 | 0.167 | 2.414 | 3.991 | 5.919 |
| Raw | 37.288 | 70.621 | 1312.486 | 26205.333 | 16271.133 | 26474.233 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_30835.1 | 717 | 7e-23 | 433 - 492 | 98 | 59 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
| JLOC1 | JLOC1_20348.1 | 626 | 4e-23 | 433 - 492 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC52954 | 557 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52836 | 583 | 3e-25 | 387 - 446 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52827 | 444 | 3e-25 | 36 - 95 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00502 | 1071 | 3e-25 | 865 - 924 | 100 | 60 / 60 | plus | ABC00502 |
| Harvest21 | ABC00567 | 616 | 1e-23 | 399 - 458 | 98 | 59 / 60 | plus | ABC00567 |
| Harvest21 | ABC00540 | 977 | 1e-23 | 767 - 826 | 98 | 59 / 60 | plus | ABC00540 |
| Harvest21 | ABC00577 | 1091 | 6e-22 | 874 - 933 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_50663 | 557 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50595 | 583 | 3e-25 | 387 - 446 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_313 | 934 | 3e-25 | 724 - 783 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_211 | 984 | 1e-23 | 767 - 826 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_82 | 1085 | 1e-23 | 866 - 925 | 98 | 59 / 60 | plus |
Contig Sequence (557 bp)
>U35_50663 557 Hv_44K_v2 ACACCACAACAAACACCACTCCCACAAGGACAACAAGATCAAATGCTTGTGCAAGTACAA ATACCATTTGTTCATCCATCTATTTTGCAGCAGCTAAACCCATGCAAGGTATTCCTCCAG CAGCAGTGCAGCCCTGTGGCAATGTCACAACGTATTGCAAGGTCGCAAATGTTGCAGCAG AGCAGTTGCTATGTGTTGCAGCAACAATGTTGCCAACAACTGCCGCAAATCCCCGAACAA TTCCGCCATGAGGCAGTCCGTGCAATCGTCTACTCTATCGTCCTGCAAGAACAACCTCAA CCACAACAGGGTCAACAACAGCAAGTGCCACAGAGTGTTTTCTTGCAGCCACTCCAGCTA GCTCAGCTTGAAGCGACGGCTTCCATTGCGCTGCGTACCCTACCAATGATGTGCAGTGTT AATGTGCCGTTCTACCGCATACTTCCATTCGGCATTGACACGAGAGTTGGTGTCTAATGA TAAGAAAAGGTCTCTATAAATATATAGTTAAATCACCGTTGTTTAATCGAGGTATATGTC GATGTAGCGGTGACAAA
Homology of Contig U35_50663 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |