barSeed - Barley Seed Development Database

Probe CUST_25348_PI390587928

Source Contig U35_38357

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25348_PI390587928	Hv_44K_v2	CGCATAGTGCCATTAGCCATTGACACCAGAGTTGGTGTCTAATGATAAGAAAAGGTATCT	618	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.017	0.014	0.199	2.065	4.008	5.280
Raw	230.143	297.431	5184.760	72939.000	52806.467	77540.667

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_355.1	568	7e-23	205 - 264	98	59 / 60	plus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012
JLOC1	JLOC1_226.1	512	4e-23	205 - 264	98	59 / 60	plus
Harvest21	ABC34484	676	3e-25	584 - 643	100	60 / 60	plus
Harvest21	ABC34299	678	3e-25	619 - 678	100	60 / 60	plus
Harvest21	ABC00781	1172	3e-25	937 - 996	100	60 / 60	plus
Harvest21	ABC00259	1011	3e-25	787 - 846	100	60 / 60	plus
Harvest21	ABC52672	431	1e-23	233 - 292	98	59 / 60	plus
Harvest21	ABC37418	411	1e-23	230 - 286	100	57 / 57	plus
Harvest21	ABC34033	632	1e-23	536 - 595	98	59 / 60	plus
Harvest21	ABC29810	599	1e-23	387 - 446	98	59 / 60	plus
Harvest21	ABC00811	560	1e-23	319 - 378	98	59 / 60	plus	ABC00811
Harvest21	ABC00793	1091	1e-23	856 - 915	98	59 / 60	plus	ABC00793
Harvest21	ABC00765	1240	1e-23	1070 - 1129	98	59 / 60	plus	ABC00765
Harvest21	ABC00556	682	1e-23	514 - 573	98	59 / 60	plus
Harvest21	ABC00549	868	1e-23	696 - 755	98	59 / 60	plus	ABC00549
Harvest21	ABC00530	1096	1e-23	877 - 936	98	59 / 60	plus	ABC00530
Harvest21	ABC00523	1235	1e-23	1001 - 1060	98	59 / 60	plus	ABC00523
Harvest21	ABC00506	1202	1e-23	973 - 1032	98	59 / 60	plus
Harvest21	ABC00305	1030	1e-23	850 - 909	98	59 / 60	plus
Harvest21	ABC00301	970	1e-23	742 - 801	98	59 / 60	plus	ABC00301
Harvest21	ABC32949	440	2e-22	224 - 283	97	58 / 60	plus	ABC32949
Harvest35	U35_38357	678	3e-25	619 - 678	100	60 / 60	plus
Harvest35	U35_318	977	3e-25	885 - 944	100	60 / 60	plus
Harvest35	U35_38176	632	1e-23	536 - 595	98	59 / 60	plus
Harvest35	U35_30098	599	1e-23	387 - 446	98	59 / 60	plus
Harvest35	U35_332	559	1e-23	319 - 378	98	59 / 60	plus
Harvest35	U35_314	1235	1e-23	1091 - 1150	98	59 / 60	plus
Harvest35	U35_215	683	1e-23	514 - 573	98	59 / 60	plus
Harvest35	U35_207	905	1e-23	748 - 807	98	59 / 60	plus
Harvest35	U35_197	1206	1e-23	973 - 1032	98	59 / 60	plus

Contig Sequence (678 bp)

>U35_38357 678 Hv_44K_v2
GCAAGAAACACTAGTTAATACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTC
GCCATTGTGGCAACAAGTACCATTGCACAGCAACAACCATGTACACCACAACAAACACCA
CTCCCACAAGGACAACAAGATCAAATGCTTGTGCAAGTACAAATACCATTTGTTCATCCA
TCTATTTTGCAGCAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTG
GCAATGTCACAACGTATTGCAAGGTCGCAAATGTTGCAACAGAGCAGTTGCCATGTGTTG
CAGCAACAATGTTGCCAACAACTGCCGCAAATCCCCGAACAACTCCGCCATGAGGCAGTC
CGTGCAATCGTCTACTCTATCGTCCTGCAAGAACAATCCCTACAATTGGTCCAAGGTGTC
TCCCAACCCCAACAACAGTCACAAAAGCAACAAGTCGGACAATGTTCTTTCCAACAACCT
CAACCACAACAGGGTCAACAACAGCAAGTGCCACAGAGTGTTTTCTTGCAGCCACACCAA
ATAGCTCAACTTGAGGCGACGACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAGT
GTTAATGTGCCGTTGTACCGCATAGTGCCATTAGCCATTGACACCAGAGTTGGTGTCTAA
TGATAAGAAAAGGTATCT

Homology of Contig U35_38357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None