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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_4629_PI390587928Hv_44K_v2TTAATCGATATATATGTCGATGTAGCGGTGACAAATAAAGTGTCACACAACCTTATGTGT822GeneList: black
MasterList: Hordein_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0210.0260.2323.0647.72712.687
Raw 39.98280.253663.00611743.59311308.19020454.300



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_22496.19987e-23236 - 2959859 / 60minus ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
MLOCMLOC_75622.116513e-22845 - 9039858 / 59minus ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012
JLOC1JLOC1_15597.18604e-2398 - 1579859 / 60minus
JLOC1JLOC1_50450.110841e-22278 - 3369858 / 59minus
Harvest21ABC000699633e-25823 - 88210060 / 60plusABC00069
Harvest21ABC005169931e-23848 - 9079859 / 60plusABC00516
Harvest21ABC530128685e-23755 - 8139858 / 59plusABC53012
Harvest21ABC0081529005e-231467 - 15259858 / 59plusABC00815
Harvest21ABC005609715e-23828 - 8869858 / 59plus
Harvest21ABC005298045e-23669 - 7279858 / 59plus
Harvest21ABC528365836e-22460 - 5199758 / 60plus
Harvest21ABC527855056e-2256 - 1159758 / 60plus
Harvest21ABC0078910726e-22933 - 9929758 / 60plus
Harvest21ABC007525486e-22423 - 4829758 / 60plus
Harvest21ABC0050210716e-22938 - 9979758 / 60plusABC00502
Harvest21ABC0024111196e-22978 - 10379758 / 60plusABC00241
Harvest21ABC0021115156e-221047 - 11069758 / 60plus
Harvest21ABC447275318e-2192 - 1499756 / 58minusABC44727
Harvest35U35_259393e-25823 - 88210060 / 60plus
Harvest35U35_7911201e-23978 - 10379859 / 60plus
Harvest35U35_33729005e-231467 - 15259858 / 59plus
Harvest35U35_505955836e-22460 - 5199758 / 60plus
Harvest35U35_32110896e-22933 - 9929758 / 60plus
Harvest35U35_3139346e-22797 - 8569758 / 60plus
Harvest35U35_3015486e-22423 - 4829758 / 60plus



Contig Sequence (939 bp)

>U35_25 939 Hv_44K_v2
TTTGCACTCCTTGCCATTGCGGCAACAAGTACCATTGCACAACAACAACCATTTCCACAA
AAACCCATCCCACAACAACCACAACCATATCCACAACAACCCTTCCCACCGCAACAACCA
TTTCCACAACAACCACCATTTTGGCAACAACAACCATTTCCACAACAACCACCATTTGGG
CTACAACAACCAATTCTATTGCAGCAACAACCATGTACACCACAACAAACACCACTCCCA
CAAGGACAACTGTACCAAATGCTTATGCAACTACAAATACCCTATGTTCATCCATCTATT
TTGCAACAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAATGCAGCCGCGTGCGAATG
CCACAAATTATTGCTAGGTCACAAATGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAA
CAATGTTGCCAGCAACTGCCGCAAATTCCCGAACAATTCCTCCATGAGGCAATCCGTGCA
ATCGTCTACTCTATCTTTTTGCAAGAACAACCCCAACAGTCGGTCCAAGGTGTCTCCCAA
CCCCAACAACAATTGCAGCAGGAGCAAGTCGGACAATGTTCTTTCCAACAACCTCAACCA
CAACAACTTGGTCAACCACAACAGGTACCACAGAGTGTTTTCTTGCAGCCACACCAGATA
GCTCAGCTTGAGGCGACGACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAATGTT
AATGTGCCGTTATTCGACATCATGCCATTCGGCGTTGGCACCGGAGTTGGCGTCTAATGA
TAAGAAAAGGTCTCGAGAAATATATAGTTGGATCACCGTTGTTTAATCGATATATATGTC
GATGTAGCGGTGACAAATAAAGTGTCACACAACCTTATGTGTGACCGGCCCAAACTTGTT
GTTTAAATTCTGGAATAAATATAAATAAAGTTTTATCTA



Homology of Contig U35_25 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None