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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37704_PI390587928Hv_44K_v2TCGATGTATATGTCGATGTAGCGGTGACAAATAAAGTGCCACACAACCTTATGTGTGACC1001GeneList: black
MasterList: Hordein_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0200.0260.2163.0227.53812.630
Raw 90.216183.5671394.57926207.26725039.33346238.433



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_75622.116517e-23841 - 9009859 / 60minus ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012
MLOCMLOC_22496.19987e-23232 - 2919859 / 60minus ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
JLOC1JLOC1_50450.110844e-23274 - 3339859 / 60minus
JLOC1JLOC1_15597.18604e-2394 - 1539859 / 60minus
Harvest21ABC0054310363e-25890 - 94910060 / 60plus
Harvest21ABC0028510083e-25865 - 92410060 / 60plus
Harvest21ABC530128681e-23758 - 8179859 / 60plusABC53012
Harvest21ABC0081529001e-231470 - 15299859 / 60plusABC00815
Harvest21ABC005609711e-23831 - 8909859 / 60plus
Harvest21ABC005298041e-23672 - 7319859 / 60plus
Harvest21ABC005169931e-23852 - 9119859 / 60plusABC00516
Harvest21ABC528365836e-22464 - 5239758 / 60plus
Harvest21ABC0050210716e-22942 - 10019758 / 60plusABC00502
Harvest21ABC0028211126e-22980 - 10399758 / 60plusABC00282
Harvest21ABC0024111196e-22982 - 10419758 / 60plusABC00241
Harvest21ABC000699636e-22827 - 8869758 / 60plusABC00069
Harvest21ABC447275318e-2190 - 1479756 / 58minusABC44727
Harvest21ABC436896298e-21361 - 4189756 / 58plus
Harvest21ABC379196028e-2196 - 1539756 / 58minusABC37919
Harvest21ABC0081814118e-211235 - 12929756 / 58plus
Harvest21ABC007859998e-21864 - 9219756 / 58plusABC00785
Harvest21ABC005859208e-21829 - 8869756 / 58plusABC00585
Harvest35U35_7511413e-251002 - 106110060 / 60plus
Harvest35U35_33729001e-231470 - 15299859 / 60plus
Harvest35U35_7911201e-23982 - 10419859 / 60plus
Harvest35U35_505955836e-22464 - 5239758 / 60plus
Harvest35U35_3139346e-22801 - 8609758 / 60plus
Harvest35U35_259396e-22827 - 8869758 / 60plus
Harvest35U35_33913798e-211235 - 12929756 / 58plus



Contig Sequence (1141 bp)

>U35_75 1141 Hv_44K_v2
GGCACGAGGATCAAAACCAAGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCT
CATCTTTGCACTCCTCGCCATTGCGGCAACAAGTACGATTGCACAGCAACAACCATTTCC
ACAACAACCCATCCCACAACAGCCACAACCATACCCACAACAACCACAACCATATCCACA
ACAACCCTTCCAACCGCAACAACCATTTCCACAACAAACCATCCCACAACAACCACAACC
ATACCCACAACAACCACAACCATATCCACAACAACCCTTCCCACCGCAACAAGCATTTCC
ACAACAACCACCATTTTGGCCACAACAACCATTTCCACATCAACCACCATTTGGGCTACA
ACAACCAATTCTATCGCAACAACAACCATGTACACCACAACAAACACCACTCCCACAAGG
ACAACTGTACCAAACGCTTCTGCAACTACAAATACCCTATGTTCAACCATCTATTTTGCA
ACAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCCGTGCGAATGCCACA
ACTTATTGCTAGGTCGCAAATGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATG
TTGCCAGCAACTGCCGCAAATCCCCGAACAATTCCGCCATGAGGCAATCCGTGCAATCGT
CTACTCTATCTTTCTGCAAGAACAACCCCAACAGTCGGTCCAAGGTGTCTCCCAATCCCA
ACAACAGTTGCAACAGGAGCAAGTCGGACAATGTTATTTCCAACAACCTCAACCACAACA
ACTTGGTCAACCACAACAGGTACCACAGAGTGTTTTCTTGCAGCCACACCAGATAGCTCA
GCTTGAGGCGAGGACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAATGTTAATGT
GCCATTGTATGACATCATGCCATTCGGCGTTGGCACTAGAGTTGGTGTCTAATGATAAGA
AAAGGTCTCTAGAGATATATAGTTGGATCACCGTTGTTTAGTCGATGTATATGTCGATGT
AGCGGTGACAAATAAAGTGCCACACAACCTTATGTGTGACCGGCCCAAACTAGTTGTTTA
AATTTTGAAATAAAATATAAATAAAGTTCATGACGACTATCAAAAAAAAAAAAAAAAAAA
A



Homology of Contig U35_75 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None