barSeed - Barley Seed Development Database

Probe CUST_13669_PI390587928

Source Contig U35_302

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13669_PI390587928	Hv_44K_v2	GCAACAAGTCGGACAATGTTCTTTCAACAACCTCAACCACAACAGGGTCAACAACAGCAA	1020	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.014	0.013	0.174	2.583	5.763	8.534
Raw	55.219	84.365	1366.041	28496.233	23505.200	38244.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_355.1	568	7e-23	33 - 93	98	60 / 61	plus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012
JLOC1	JLOC1_226.1	512	4e-23	33 - 93	98	60 / 61	plus
JLOC1	JLOC1_20348.1	626	6e-21	251 - 307	98	56 / 57	plus
Harvest21	ABC37418	411	1e-23	54 - 114	98	60 / 61	plus
Harvest21	ABC34484	676	1e-23	412 - 472	98	60 / 61	plus
Harvest21	ABC34324	711	1e-23	558 - 618	98	60 / 61	plus
Harvest21	ABC34299	678	1e-23	447 - 507	98	60 / 61	plus
Harvest21	ABC34033	632	1e-23	364 - 424	98	60 / 61	plus
Harvest21	ABC32949	440	1e-23	52 - 112	98	60 / 61	plus	ABC32949
Harvest21	ABC29810	599	1e-23	215 - 275	98	60 / 61	plus
Harvest21	ABC00799	681	1e-23	608 - 668	98	60 / 61	plus
Harvest21	ABC00793	1091	1e-23	684 - 744	98	60 / 61	plus	ABC00793
Harvest21	ABC00783	801	1e-23	608 - 668	98	60 / 61	plus
Harvest21	ABC00781	1172	1e-23	765 - 825	98	60 / 61	plus
Harvest21	ABC00765	1240	1e-23	898 - 958	98	60 / 61	plus	ABC00765
Harvest21	ABC00757	605	1e-23	448 - 508	98	60 / 61	plus
Harvest21	ABC00563	650	1e-23	557 - 617	98	60 / 61	plus
Harvest21	ABC00549	868	1e-23	524 - 584	98	60 / 61	plus	ABC00549
Harvest21	ABC00531	704	1e-23	524 - 584	98	60 / 61	plus
Harvest21	ABC00523	1235	1e-23	829 - 889	98	60 / 61	plus	ABC00523
Harvest21	ABC00506	1202	1e-23	801 - 861	98	60 / 61	plus
Harvest21	ABC00305	1030	1e-23	678 - 738	98	60 / 61	plus
Harvest21	ABC00302	713	1e-23	562 - 622	98	60 / 61	plus
Harvest21	ABC00301	970	1e-23	570 - 630	98	60 / 61	plus	ABC00301
Harvest21	ABC00259	1011	1e-23	615 - 675	98	60 / 61	plus
Harvest21	ABC00211	1515	1e-23	791 - 851	98	60 / 61	plus
Harvest21	ABC00811	560	5e-23	148 - 207	98	59 / 60	plus	ABC00811
Harvest21	ABC34302	692	2e-22	634 - 692	98	58 / 59	plus
Harvest21	ABC43850	600	6e-22	531 - 591	97	59 / 61	plus
Harvest21	ABC29837	681	6e-22	578 - 637	97	59 / 61	plus
Harvest21	ABC00556	682	6e-22	342 - 402	97	59 / 61	plus
Harvest21	ABC00530	1096	6e-22	705 - 765	97	59 / 61	plus	ABC00530
Harvest21	ABC00776	600	2e-21	542 - 598	98	56 / 57	plus
Harvest21	ABC00502	1071	2e-21	683 - 739	98	56 / 57	plus	ABC00502
Harvest35	U35_302	1080	3e-25	1021 - 1080	100	60 / 60	plus
Harvest35	U35_38357	678	1e-23	447 - 507	98	60 / 61	plus
Harvest35	U35_38176	632	1e-23	364 - 424	98	60 / 61	plus
Harvest35	U35_30098	599	1e-23	215 - 275	98	60 / 61	plus
Harvest35	U35_318	977	1e-23	713 - 773	98	60 / 61	plus
Harvest35	U35_314	1235	1e-23	919 - 979	98	60 / 61	plus
Harvest35	U35_303	605	1e-23	448 - 508	98	60 / 61	plus
Harvest35	U35_207	905	1e-23	576 - 636	98	60 / 61	plus
Harvest35	U35_204	706	1e-23	524 - 584	98	60 / 61	plus
Harvest35	U35_197	1206	1e-23	801 - 861	98	60 / 61	plus
Harvest35	U35_196	685	1e-23	612 - 672	98	60 / 61	plus
Harvest35	U35_115	711	1e-23	558 - 618	98	60 / 61	plus
Harvest35	U35_88	720	1e-23	615 - 675	98	60 / 61	plus
Harvest35	U35_68	955	1e-23	737 - 797	98	60 / 61	plus
Harvest35	U35_24	729	1e-23	578 - 638	98	60 / 61	plus
Harvest35	U35_7	828	1e-23	756 - 816	98	60 / 61	plus
Harvest35	U35_332	559	5e-23	148 - 207	98	59 / 60	plus
Harvest35	U35_38360	692	2e-22	634 - 692	98	58 / 59	plus
Harvest35	U35_215	683	6e-22	342 - 402	97	59 / 61	plus
Harvest35	U35_206	602	6e-22	533 - 593	97	59 / 61	plus
Harvest35	U35_313	934	2e-21	542 - 598	98	56 / 57	plus
Harvest35	U35_82	1085	2e-21	684 - 740	98	56 / 57	plus

Contig Sequence (1080 bp)

>U35_302 1080 Hv_44K_v2
TTACTGCTGTCGCACAAGTACAGTGTACGCAGGTGCATAGTTGAGTGCAAATTACATCGT
GTTGTTGGATTGAAATTTAAGGTGATACTACTAGTTGATAGGGGAAGCTTATAGCAGCAT
CATCAGCCTCCGGTTGCCAGCCTTCCGCCCGCCGCCGCCGCCAAAACCAAGCAACACTAG
TTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTGGCCATTGCGGCAAC
AAGTACGATTGCGCAGCAACAACCACTTCCGCAACAACCCATCCCACAAAAACCACAACC
ATACCCACAACAACCCTTCCCACCGCAACAACCATTTCCACAACAACCCGTCCCACAACA
ACCACAACCATACCCACAACAACCACAACAACCCTTCCCACCGCAACAACCATTTCCACA
ACAACCCGTCCCACAACAACCACAACCATACCCACAACAACCACAACCATTTTCACAACA
GCCCATCCCACAACAACCACAACCATACCCACAACAACCACAACCATTTCCACAACAACC
CATCCCACAACAACCACAACCATACCCACAACAACCACAACCATTTCCACAACAACCCTT
CCCATCACAACAACCATTTCCACAACAACCACCATTTTGGCAACAACAACCAGTTCTATC
GCAGCAACAACCATGTACACAAGACCAAACACCACTCCTACAAGAACAACAAGATCAAAT
GCTTGTGCAAGTACAAATACCATTTGTTCATCCATCTATTTTGCAGCAGCTAAACCCATG
CAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTGGCAATGTCACAACGTATTGCAAGGTC
GCAAATGTTGCAACAGAGCAGTTGCCATGCGTTGCAGCAACAATGTTGCCAACAACTGCC
GCAAATCCCCGAACAACTCCGCCATGAGGCAGTCCGTGCAATCGTCTACTCTATCGTCCT
GCAAGAACAATCCCTACAATTGGTCCAAGGTGTCTCCCAACCCCAACAACAGTCACAACA
GCAACAAGTCGGACAATGTTCTTTCAACAACCTCAACCACAACAGGGTCAACAACAGCAA

Homology of Contig U35_302 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None