barSeed - Barley Seed Development Database

Probe CUST_7637_PI390587928

Source Contig U35_215

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7637_PI390587928	Hv_44K_v2	GAAAATGTTCTTTCCAACAACCTCAACCACAACAGGGTCAACAACAGCAAGTGCCACAGA	352	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.015	0.013	0.180	2.466	5.594	7.878
Raw	108.539	143.673	2515.198	47857.033	40627.433	63108.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30835.1	717	7e-23	261 - 317	100	57 / 57	plus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
MLOC	MLOC_355.1	568	7e-23	47 - 103	100	57 / 57	plus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012
JLOC1	JLOC1_20348.1	626	4e-23	261 - 317	100	57 / 57	plus
JLOC1	JLOC1_226.1	512	4e-23	47 - 103	100	57 / 57	plus
Harvest21	ABC00556	682	3e-25	353 - 412	100	60 / 60	plus
Harvest21	ABC00530	1096	3e-25	716 - 775	100	60 / 60	plus	ABC00530
Harvest21	ABC43850	600	1e-24	542 - 600	100	59 / 59	plus
Harvest21	ABC37418	411	1e-23	68 - 124	100	57 / 57	plus
Harvest21	ABC34484	676	1e-23	426 - 482	100	57 / 57	plus
Harvest21	ABC34324	711	1e-23	572 - 628	100	57 / 57	plus
Harvest21	ABC34299	678	1e-23	461 - 517	100	57 / 57	plus
Harvest21	ABC34033	632	1e-23	378 - 434	100	57 / 57	plus
Harvest21	ABC32949	440	1e-23	66 - 122	100	57 / 57	plus	ABC32949
Harvest21	ABC29810	599	1e-23	229 - 285	100	57 / 57	plus
Harvest21	ABC00811	560	1e-23	161 - 217	100	57 / 57	plus	ABC00811
Harvest21	ABC00799	681	1e-23	622 - 678	100	57 / 57	plus
Harvest21	ABC00793	1091	1e-23	698 - 754	100	57 / 57	plus	ABC00793
Harvest21	ABC00783	801	1e-23	622 - 678	100	57 / 57	plus
Harvest21	ABC00781	1172	1e-23	779 - 835	100	57 / 57	plus
Harvest21	ABC00765	1240	1e-23	912 - 968	100	57 / 57	plus	ABC00765
Harvest21	ABC00757	605	1e-23	462 - 518	100	57 / 57	plus
Harvest21	ABC00563	650	1e-23	571 - 627	100	57 / 57	plus
Harvest21	ABC00549	868	1e-23	538 - 594	100	57 / 57	plus	ABC00549
Harvest21	ABC00531	704	1e-23	538 - 594	100	57 / 57	plus
Harvest21	ABC00523	1235	1e-23	843 - 899	100	57 / 57	plus	ABC00523
Harvest21	ABC00506	1202	1e-23	815 - 871	100	57 / 57	plus
Harvest21	ABC00502	1071	1e-23	693 - 749	100	57 / 57	plus	ABC00502
Harvest21	ABC00305	1030	1e-23	692 - 748	100	57 / 57	plus
Harvest21	ABC00302	713	1e-23	576 - 632	100	57 / 57	plus
Harvest21	ABC00301	970	1e-23	584 - 640	100	57 / 57	plus	ABC00301
Harvest21	ABC00259	1011	1e-23	629 - 685	100	57 / 57	plus
Harvest21	ABC00211	1515	1e-23	805 - 861	100	57 / 57	plus
Harvest21	ABC52941	477	6e-22	193 - 249	98	56 / 57	plus
Harvest21	ABC44727	531	6e-22	340 - 396	98	56 / 57	minus	ABC44727
Harvest21	ABC00577	1091	6e-22	702 - 758	98	56 / 57	plus
Harvest21	ABC00567	616	6e-22	227 - 283	98	56 / 57	plus	ABC00567
Harvest21	ABC00540	977	6e-22	595 - 651	98	56 / 57	plus	ABC00540
Harvest21	ABC29837	681	2e-21	592 - 647	98	56 / 57	plus
Harvest35	U35_215	683	3e-25	353 - 412	100	60 / 60	plus
Harvest35	U35_206	602	1e-24	544 - 602	100	59 / 59	plus
Harvest35	U35_38357	678	1e-23	461 - 517	100	57 / 57	plus
Harvest35	U35_38176	632	1e-23	378 - 434	100	57 / 57	plus
Harvest35	U35_30098	599	1e-23	229 - 285	100	57 / 57	plus
Harvest35	U35_332	559	1e-23	161 - 217	100	57 / 57	plus
Harvest35	U35_318	977	1e-23	727 - 783	100	57 / 57	plus
Harvest35	U35_314	1235	1e-23	933 - 989	100	57 / 57	plus
Harvest35	U35_313	934	1e-23	552 - 608	100	57 / 57	plus
Harvest35	U35_303	605	1e-23	462 - 518	100	57 / 57	plus
Harvest35	U35_207	905	1e-23	590 - 646	100	57 / 57	plus
Harvest35	U35_204	706	1e-23	538 - 594	100	57 / 57	plus
Harvest35	U35_197	1206	1e-23	815 - 871	100	57 / 57	plus
Harvest35	U35_196	685	1e-23	626 - 682	100	57 / 57	plus
Harvest35	U35_115	711	1e-23	572 - 628	100	57 / 57	plus
Harvest35	U35_88	720	1e-23	629 - 685	100	57 / 57	plus
Harvest35	U35_82	1085	1e-23	694 - 750	100	57 / 57	plus
Harvest35	U35_68	955	1e-23	751 - 807	100	57 / 57	plus
Harvest35	U35_24	729	1e-23	592 - 648	100	57 / 57	plus
Harvest35	U35_7	828	1e-23	770 - 826	100	57 / 57	plus
Harvest35	U35_211	984	6e-22	595 - 651	98	56 / 57	plus

Contig Sequence (683 bp)

>U35_215 683 Hv_44K_v2
AGTTAATACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATTGTGGCA
ACAACTACCATTGCACAGCAACAACCATACCCACAACAACCACAACCATTTCCACAACAA
ACACCACTCCCACAAGGACAACAAGATCAAATGCTTGTGCAAGTACAAATACCATTTGTT
CATCCATCTATTTTGCAGCAACAATGTTGCCAACAACTGCCGCAAATCCCCGAACAACTC
CGCCATGAGGCAGTCCGTGCAATCGTCTACTCTATCGTCCTGCAAGAACAATCCCTACAA
TTGGTCCAAGGTGTCTCCCAACCCCAACAACAGTCACAACAGCAACAAGTCGGAAAATGT
TCTTTCCAACAACCTCAACCACAACAGGGTCAACAACAGCAAGTGCCACAGAGTGTTTTC
TTGCAGCCACACCAAATAGCTCAACTTGAGGCGACAACTTCCATTGCGTTGCGTACCCTA
CCAACGATGTGCAGTGTTAATGTGCCGTTGTACCGCATAGTGCCATTAGCCATTGACACC
AGAGTTGGTGTCTAATGATAAGAAAAGGTCTCTAGAAATATATAGTTGAATCACCGTTGT
TCAATCGAGGTATATGTCGATGTAGCGGTGATAAATAAAGTGTCAACCTTATGTATGACC
GGCCCAAACTTCATGTTTAAATT

Homology of Contig U35_215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None