- Probe CUST_37669_PI390587928
- Source Contig U35_82
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37669_PI390587928 | Hv_44K_v2 | TGACAAATAAAGTGTCACACAACCTTATGTGTGACCGACCAAGACTTGATGTTTAAATTC | 966 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.017 | 0.015 | 0.188 | 3.047 | 6.346 | 8.350 |
| Raw | 19.458 | 29.167 | 360.105 | 7827.823 | 6307.330 | 9089.007 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_30835.1 | 717 | 3e-22 | 534 - 592 | 98 | 58 / 59 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
| JLOC1 | JLOC1_20348.1 | 626 | 1e-22 | 534 - 592 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC00577 | 1091 | 3e-25 | 975 - 1034 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52836 | 583 | 1e-23 | 488 - 547 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00502 | 1071 | 1e-23 | 966 - 1025 | 98 | 59 / 60 | plus | ABC00502 |
| Harvest21 | ABC44727 | 531 | 5e-23 | 65 - 123 | 98 | 58 / 59 | minus | ABC44727 |
| Harvest35 | U35_82 | 1085 | 3e-25 | 967 - 1026 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50595 | 583 | 1e-23 | 488 - 547 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_313 | 934 | 1e-23 | 825 - 884 | 98 | 59 / 60 | plus |
Contig Sequence (1085 bp)
>U35_82 1085 Hv_44K_v2 GATCAAAGCCAAGAAACACTAGTTAATACCAATCCACCATGAAGACCTTCCTCATCTTTG CACTCCTCGCCATTGTGGCAACAAGTACCATTGCACAGCAACAACCATACCCACAACAAC CACAACCATTTCCACAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCAC AACCATTTCCACAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCACAAC CATTTCCACAACAACCCTTCCCATCACAACAACCATTTCCGCAACAACCACCATTTTGGC AACAACAACCAATTCTATCGCAGCAACAACCATGTACACCACAACAAACACCACTCCCAC AAGGACAACAAGATCAAATGCTTGTGCAAGTACAAATACCATTTGTTCATCCATCTATTT TGCAGCAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTGGCAATGT CACAACGTATTGCAAGGTCGCAAATGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAAC AATGTTGCCAACAACTGCCGCAAATCCCCGAACAATTCCGCCATGAGGCAGTCCGTGCAA TCGTCTACTCTATCATCCTGCAAGAACAACCCCAACAATTGGTCCAAGGTGTCTCCCAAC CCCAACAACAGTCGCAGCTACAGCAAGTCGGACAATGTTCTTTCCAACAACCTCAACCAC AACAGGGTCAACAACAGCAAGTGCCACAGAGTGTTTTCTTGCAGCCACACCAGCTAGCTC AGCTTGAGGCGACGGTTTCCATTGCGCTGCGTACCCTACCAATGATGTGCAGTGTTAATG TGCCGTTGTACCGCATACTTCCATTCGGCATTGACACGAGAGTTGGTGTCTAATGATAAG AAAAGGTCTCTAGAAATATATAGTTGAATAATCGTTGTTGAATCGAGGTATATGTCGATG TAGCAGTGACAAATAAAGTGTCACACAACCTTATGTGTGACCGACCAAGACTTGATGTTT AAATTCTGGAATAAAATATAAATAAAGTTTTATCTAGACAATATTCAAAAAAAAAAAAAA AAAAA
Homology of Contig U35_82 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |