- Probe CUST_37063_PI390587928
- Source Contig U35_7
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_37063_PI390587928 | Hv_44K_v2 | ACAAGTCGGACAATGTTCTTTCCAACAACCTCAACCACAACAGGGTCAACAACAGCAAGT | 758 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.013 | 0.013 | 0.160 | 2.422 | 5.150 | 7.681 |
Raw | 91.754 | 145.759 | 2251.531 | 47573.033 | 37260.567 | 61578.333 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_355.1 | 568 | 2e-24 | 36 - 95 | 100 | 60 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012 |
MLOC | MLOC_30835.1 | 717 | 6e-24 | 251 - 309 | 100 | 59 / 59 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
JLOC1 | JLOC1_226.1 | 512 | 8e-25 | 36 - 95 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_20348.1 | 626 | 3e-24 | 251 - 309 | 100 | 59 / 59 | plus | |
Harvest21 | ABC37418 | 411 | 3e-25 | 57 - 116 | 100 | 60 / 60 | plus | |
Harvest21 | ABC34484 | 676 | 3e-25 | 415 - 474 | 100 | 60 / 60 | plus | |
Harvest21 | ABC34324 | 711 | 3e-25 | 561 - 620 | 100 | 60 / 60 | plus | |
Harvest21 | ABC34299 | 678 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus | |
Harvest21 | ABC34033 | 632 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus | |
Harvest21 | ABC32949 | 440 | 3e-25 | 55 - 114 | 100 | 60 / 60 | plus | ABC32949 |
Harvest21 | ABC29810 | 599 | 3e-25 | 218 - 277 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00811 | 560 | 3e-25 | 150 - 209 | 100 | 60 / 60 | plus | ABC00811 |
Harvest21 | ABC00799 | 681 | 3e-25 | 611 - 670 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00793 | 1091 | 3e-25 | 687 - 746 | 100 | 60 / 60 | plus | ABC00793 |
Harvest21 | ABC00783 | 801 | 3e-25 | 611 - 670 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00781 | 1172 | 3e-25 | 768 - 827 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00765 | 1240 | 3e-25 | 901 - 960 | 100 | 60 / 60 | plus | ABC00765 |
Harvest21 | ABC00757 | 605 | 3e-25 | 451 - 510 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00563 | 650 | 3e-25 | 560 - 619 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00549 | 868 | 3e-25 | 527 - 586 | 100 | 60 / 60 | plus | ABC00549 |
Harvest21 | ABC00531 | 704 | 3e-25 | 527 - 586 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00523 | 1235 | 3e-25 | 832 - 891 | 100 | 60 / 60 | plus | ABC00523 |
Harvest21 | ABC00506 | 1202 | 3e-25 | 804 - 863 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00305 | 1030 | 3e-25 | 681 - 740 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00302 | 713 | 3e-25 | 565 - 624 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00301 | 970 | 3e-25 | 573 - 632 | 100 | 60 / 60 | plus | ABC00301 |
Harvest21 | ABC00259 | 1011 | 3e-25 | 618 - 677 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00211 | 1515 | 3e-25 | 794 - 853 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00776 | 600 | 1e-24 | 542 - 600 | 100 | 59 / 59 | plus | |
Harvest21 | ABC00502 | 1071 | 1e-24 | 683 - 741 | 100 | 59 / 59 | plus | ABC00502 |
Harvest21 | ABC43850 | 600 | 1e-23 | 534 - 593 | 98 | 59 / 60 | plus | |
Harvest21 | ABC00556 | 682 | 1e-23 | 345 - 404 | 98 | 59 / 60 | plus | |
Harvest21 | ABC00530 | 1096 | 1e-23 | 708 - 767 | 98 | 59 / 60 | plus | ABC00530 |
Harvest21 | ABC44727 | 531 | 5e-23 | 348 - 406 | 98 | 58 / 59 | minus | ABC44727 |
Harvest21 | ABC34302 | 692 | 5e-23 | 637 - 692 | 100 | 56 / 56 | plus | |
Harvest21 | ABC29837 | 681 | 5e-23 | 581 - 639 | 98 | 59 / 60 | plus | |
Harvest21 | ABC00577 | 1091 | 5e-23 | 692 - 750 | 98 | 58 / 59 | plus | |
Harvest21 | ABC00567 | 616 | 5e-23 | 217 - 275 | 98 | 58 / 59 | plus | ABC00567 |
Harvest21 | ABC00540 | 977 | 5e-23 | 585 - 643 | 98 | 58 / 59 | plus | ABC00540 |
Harvest21 | ABC52941 | 477 | 2e-21 | 186 - 241 | 98 | 55 / 56 | plus | |
Harvest35 | U35_38357 | 678 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus | |
Harvest35 | U35_38176 | 632 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus | |
Harvest35 | U35_30098 | 599 | 3e-25 | 218 - 277 | 100 | 60 / 60 | plus | |
Harvest35 | U35_332 | 559 | 3e-25 | 150 - 209 | 100 | 60 / 60 | plus | |
Harvest35 | U35_318 | 977 | 3e-25 | 716 - 775 | 100 | 60 / 60 | plus | |
Harvest35 | U35_314 | 1235 | 3e-25 | 922 - 981 | 100 | 60 / 60 | plus | |
Harvest35 | U35_303 | 605 | 3e-25 | 451 - 510 | 100 | 60 / 60 | plus | |
Harvest35 | U35_207 | 905 | 3e-25 | 579 - 638 | 100 | 60 / 60 | plus | |
Harvest35 | U35_204 | 706 | 3e-25 | 527 - 586 | 100 | 60 / 60 | plus | |
Harvest35 | U35_197 | 1206 | 3e-25 | 804 - 863 | 100 | 60 / 60 | plus | |
Harvest35 | U35_196 | 685 | 3e-25 | 615 - 674 | 100 | 60 / 60 | plus | |
Harvest35 | U35_115 | 711 | 3e-25 | 561 - 620 | 100 | 60 / 60 | plus | |
Harvest35 | U35_88 | 720 | 3e-25 | 618 - 677 | 100 | 60 / 60 | plus | |
Harvest35 | U35_68 | 955 | 3e-25 | 740 - 799 | 100 | 60 / 60 | plus | |
Harvest35 | U35_24 | 729 | 3e-25 | 581 - 640 | 100 | 60 / 60 | plus | |
Harvest35 | U35_7 | 828 | 3e-25 | 759 - 818 | 100 | 60 / 60 | plus | |
Harvest35 | U35_313 | 934 | 1e-24 | 542 - 600 | 100 | 59 / 59 | plus | |
Harvest35 | U35_82 | 1085 | 1e-24 | 684 - 742 | 100 | 59 / 59 | plus | |
Harvest35 | U35_215 | 683 | 1e-23 | 345 - 404 | 98 | 59 / 60 | plus | |
Harvest35 | U35_206 | 602 | 1e-23 | 536 - 595 | 98 | 59 / 60 | plus | |
Harvest35 | U35_38360 | 692 | 5e-23 | 637 - 692 | 100 | 56 / 56 | plus | |
Harvest35 | U35_211 | 984 | 5e-23 | 585 - 643 | 98 | 58 / 59 | plus | |
Harvest35 | U35_302 | 1080 | 6e-22 | 1024 - 1080 | 98 | 57 / 58 | plus |
Contig Sequence (828 bp)
>U35_7 828 Hv_44K_v2 TCAAAACCAAGCAACACTAGTTAATACCAATCCATCATGAAGACCTTCCTCATCTTTGCA CTCCTCGCCATTGTGGCAACAAGTACCATTGCACAACAACAACCATACCCACAACAACCA CAACCATTTCCACAACAACCCATCCCACAACAACCACAACCATTTCCACAACAACCACAA CCATACCCACAACAACCACAACCATTTCCACAACAACCCATCCCACAACAACCACAACCA TACCCACAACAACCACAACCATTTCCACAACAACCCATCCCACAACAACCACAACCATAC CCACAACAACCACAACCATTTCCCCTACAACCCTTCCCATCACAACAACCATTTCCACAA CAACCACCATTTTGGCAACAACAACCAGTTCTATCGCAGCAACAACCATGTACACAAGAA CAAACACCACTCCTACAAGAACAACAAGATCAAATGCTTCTGCAAGTACAAATACCATTT GTTCATCCATCTATTTTGCAGCAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGC AGCCCTGTGGCAATGTCACAACGTATTGCAAGGTCGCAGATGTTGCAACAGAGCAGTTGC CATGTGTTGCAGCAACAGTGTTGCCAACAACTGCCGCAAATCCCCGAACAACTCCGCCAT GAGGCAGTCCGTGCAATCGTCTACTCTATCGTCCTGCAAGAACAATCCCTACAATTGGTC CAAGGTGTCTCCCAACCCCAACAACAGTCACAACAGCAACAAGTCGGACAATGTTCTTTC CAACAACCTCAACCACAACAGGGTCAACAACAGCAAGTGCCACAGAGT
Homology of Contig U35_7 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |