- Probe CUST_13638_PI390587928
- Source Contig U35_319
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13638_PI390587928 | Hv_44K_v2 | GTTGGACAATGTTCTTTCCAACAACCTCAACCACAACAACTTGGTCAACCACAGCAGGTA | 603 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.012 | 0.013 | 0.146 | 2.498 | 5.614 | 8.254 |
| Raw | 62.646 | 102.600 | 1588.900 | 38812.400 | 31762.767 | 51183.533 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6381.1 | 1035 | 2e-24 | 317 - 376 | 100 | 60 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| MLOC | MLOC_22496.1 | 998 | 3e-21 | 491 - 547 | 98 | 56 / 57 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
| JLOC1 | JLOC1_4154.1 | 1067 | 8e-25 | 340 - 399 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_15597.1 | 860 | 2e-21 | 353 - 409 | 98 | 56 / 57 | minus | |
| Harvest21 | ABC43689 | 629 | 3e-25 | 101 - 160 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00785 | 999 | 3e-25 | 604 - 663 | 100 | 60 / 60 | plus | ABC00785 |
| Harvest21 | ABC00763 | 763 | 4e-24 | 697 - 756 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00795 | 785 | 5e-23 | 730 - 785 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC37919 | 602 | 6e-22 | 354 - 413 | 97 | 58 / 60 | minus | ABC37919 |
| Harvest21 | ABC34461 | 633 | 6e-22 | 514 - 573 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00818 | 1411 | 6e-22 | 975 - 1034 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00585 | 920 | 6e-22 | 569 - 628 | 97 | 58 / 60 | plus | ABC00585 |
| Harvest21 | ABC00516 | 993 | 6e-22 | 596 - 652 | 98 | 56 / 57 | plus | ABC00516 |
| Harvest21 | ABC00258 | 597 | 6e-22 | 531 - 590 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00241 | 1119 | 6e-22 | 726 - 782 | 98 | 56 / 57 | plus | ABC00241 |
| Harvest21 | ABC00069 | 963 | 6e-22 | 571 - 627 | 98 | 56 / 57 | plus | ABC00069 |
| Harvest35 | U35_319 | 724 | 3e-25 | 604 - 663 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38477 | 633 | 6e-22 | 514 - 573 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_339 | 1379 | 6e-22 | 975 - 1034 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_87 | 602 | 6e-22 | 536 - 595 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_79 | 1120 | 6e-22 | 726 - 782 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_25 | 939 | 6e-22 | 571 - 627 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_213 | 638 | 8e-21 | 587 - 638 | 100 | 52 / 52 | plus |
Contig Sequence (724 bp)
>U35_319 724 Hv_44K_v2 AAACCAAGCAACACTAGTTAATACCAATCCATCATGAAGACCTTCCTCATCTTTGCACTC CTCGCCATTGTGGCAACAAGTACCATTGAACAACCACAACCATACCCACAACAACCACAA CCATATCCACAACAACCCTTCCCACCGCAACAAGAATTTCCACAACAACCACCATTTTGG CCACAACAACCATTTCCACAGCAACCACCATTTGGGCTACAACAACGAATTCTATCGCAG CAACAACCATGTACACCACAACAAACACCACTCCCACAAGGACAACTGTATCAAACGCTT CTGCAACTACAAATACCCTATGTTCATCCATCTATTTTGCAACAGCTAAACCCATGCAAG GTATTCCTCCAGCAGCAGTGCAGCCCCGTGCGAATGCCACAACTTATTGCTAGGTTGCAA ATGTTGCAGCTGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAGCAACTGCCGCAA ATCTCCGAACAATTCCGCCATGAGGCAATCCGTGCAATCGTCTACTCTATCTTTCTGCAA GAACAACCCCAACAGTCGGTCCAAGGTGTATCCCAAACCCAACAACAGTTGCAGCAGGAG AAAGTTGGACAATGTTCTTTCCAACAACCTCAACCACAACAACTTGGTCAACCACAGCAG GTACCACAAAGTGTTTTCTTGCAGCCACACCAGATAGCTCAGCTTGAGGCGACGACTTCC ATTG
Homology of Contig U35_319 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |