- Probe CUST_13624_PI390587928
- Source Contig U35_330
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_13624_PI390587928 | Hv_44K_v2 | GTCGGACAATGTTCTTTCCAACAACCTCAACCACAACAAGTTGGCCAACAACAACAGGTA | 597 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.010 | 0.013 | 0.140 | 2.307 | 4.946 | 7.856 |
Raw | 33.877 | 139.795 | 1798.642 | 42156.200 | 33518.500 | 57180.400 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_46003.1 | 1379 | 2e-24 | 359 - 418 | 100 | 60 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
MLOC | MLOC_75622.1 | 1651 | 7e-23 | 1072 - 1131 | 98 | 59 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
JLOC1 | JLOC1_29821.1 | 840 | 8e-25 | 359 - 418 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_29820.1 | 602 | 8e-25 | 185 - 244 | 100 | 60 / 60 | minus | |
JLOC1 | JLOC1_50450.1 | 1084 | 4e-23 | 505 - 564 | 98 | 59 / 60 | minus | |
Harvest21 | ABC52905 | 672 | 3e-25 | 523 - 582 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00805 | 671 | 3e-25 | 598 - 657 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00789 | 1072 | 3e-25 | 681 - 740 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00762 | 693 | 3e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00751 | 669 | 3e-25 | 528 - 587 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00559 | 906 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00815 | 2900 | 1e-23 | 1239 - 1298 | 98 | 59 / 60 | plus | ABC00815 |
Harvest21 | ABC00529 | 804 | 1e-23 | 441 - 500 | 98 | 59 / 60 | plus | |
Harvest21 | ABC00528 | 602 | 1e-23 | 452 - 511 | 98 | 59 / 60 | plus | |
Harvest21 | ABC00560 | 971 | 5e-23 | 600 - 658 | 98 | 58 / 59 | plus | |
Harvest21 | ABC53012 | 868 | 6e-22 | 527 - 586 | 97 | 58 / 60 | plus | ABC53012 |
Harvest35 | U35_330 | 671 | 3e-25 | 598 - 657 | 100 | 60 / 60 | plus | |
Harvest35 | U35_321 | 1089 | 3e-25 | 681 - 740 | 100 | 60 / 60 | plus | |
Harvest35 | U35_312 | 1046 | 3e-25 | 897 - 956 | 100 | 60 / 60 | plus | |
Harvest35 | U35_306 | 693 | 3e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
Harvest35 | U35_300 | 669 | 3e-25 | 528 - 587 | 100 | 60 / 60 | plus | |
Harvest35 | U35_218 | 599 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
Harvest35 | U35_337 | 2900 | 1e-23 | 1239 - 1298 | 98 | 59 / 60 | plus | |
Harvest35 | U35_202 | 652 | 1e-23 | 441 - 500 | 98 | 59 / 60 | plus |
Contig Sequence (671 bp)
>U35_330 671 Hv_44K_v2 AACACTAGTTAATACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATT GTGGCAACAAGTACCATTGCACAGCAACAACCATACCCACAACAACCACAACCATTTCCA CAACAACCCATCCTACAACAACCACAACCATACCCACAACAACCACAACCATTTCCACAA CAGCCCATCCCACAACAACCACAACCATACCTACAACAACCAATTCTATCGCAGCAACAA CCATGTACACCACAACAAACACCACTCCCACAAGGACAACTGTACCAAACGCTTCTGCAA CTACAAATACAATATGTTCATCCATCTATTTTGCAACAGCTAAACCCATGCAAGGTATTC CTCCAGCAGCAGTGCAGCCCTGTGCCAATGCCACAACGTATTGCTAGGTCGCAACTGTTG CAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAACAACTTCCCCAAATCCCC GAACAATTCCGTCATGAGGCAATCCGTGCAATCGTCTACTCTATCTTCCTGCAAGAACAA CTCCAACTATCGGTCCAAGGTGTATCCCAACCCCAACAACAGTTGGGGCAGCAGCAAGTC GGACAATGTTCTTTCCAACAACCTCAACCACAACAAGTTGGCCAACAACAACAGGTACCA CAGAGTGCTTT
Homology of Contig U35_330 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |