- Probe CUST_37662_PI390587928
- Source Contig U35_87
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37662_PI390587928 | Hv_44K_v2 | TTGGACAATGTTCTTTCCAACAACCTCAACCACAACAACTTGGTCAAGCACAACAGGTAC | 536 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.013 | 0.013 | 0.153 | 2.626 | 6.062 | 8.599 |
| Raw | 65.838 | 109.132 | 1555.753 | 37113.033 | 31925.933 | 49763.833 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22496.1 | 998 | 9e-22 | 490 - 547 | 98 | 57 / 58 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012 |
| MLOC | MLOC_6381.1 | 1035 | 3e-21 | 316 - 375 | 97 | 58 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012 |
| JLOC1 | JLOC1_15597.1 | 860 | 5e-22 | 352 - 409 | 98 | 57 / 58 | minus | |
| JLOC1 | JLOC1_4154.1 | 1067 | 2e-21 | 339 - 398 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC37919 | 602 | 3e-25 | 353 - 412 | 100 | 60 / 60 | minus | ABC37919 |
| Harvest21 | ABC34461 | 633 | 3e-25 | 515 - 574 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00818 | 1411 | 3e-25 | 976 - 1035 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00585 | 920 | 3e-25 | 570 - 629 | 100 | 60 / 60 | plus | ABC00585 |
| Harvest21 | ABC00258 | 597 | 3e-25 | 532 - 591 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34137 | 702 | 5e-23 | 647 - 702 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC00516 | 993 | 2e-22 | 596 - 653 | 98 | 57 / 58 | plus | ABC00516 |
| Harvest21 | ABC00241 | 1119 | 2e-22 | 726 - 783 | 98 | 57 / 58 | plus | ABC00241 |
| Harvest21 | ABC00069 | 963 | 2e-22 | 571 - 628 | 98 | 57 / 58 | plus | ABC00069 |
| Harvest21 | ABC43689 | 629 | 6e-22 | 102 - 161 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00785 | 999 | 6e-22 | 605 - 664 | 97 | 58 / 60 | plus | ABC00785 |
| Harvest21 | ABC52707 | 645 | 8e-21 | 477 - 534 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC32998 | 547 | 8e-21 | 484 - 541 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC32847 | 498 | 8e-21 | 143 - 200 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC32538 | 494 | 8e-21 | 185 - 242 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00822 | 1417 | 8e-21 | 1034 - 1091 | 97 | 56 / 58 | plus | ABC00822 |
| Harvest21 | ABC00582 | 689 | 8e-21 | 511 - 568 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00543 | 1036 | 8e-21 | 634 - 691 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00524 | 874 | 8e-21 | 765 - 822 | 97 | 56 / 58 | plus | ABC00524 |
| Harvest21 | ABC00296 | 861 | 8e-21 | 595 - 652 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00292 | 684 | 8e-21 | 593 - 650 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00285 | 1008 | 8e-21 | 609 - 666 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00282 | 1112 | 8e-21 | 724 - 781 | 97 | 56 / 58 | plus | ABC00282 |
| Harvest21 | ABC00264 | 895 | 8e-21 | 719 - 776 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00243 | 589 | 8e-21 | 522 - 579 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00240 | 798 | 8e-21 | 589 - 646 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00232 | 1132 | 8e-21 | 749 - 806 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00214 | 698 | 8e-21 | 582 - 639 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_38477 | 633 | 3e-25 | 515 - 574 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_339 | 1379 | 3e-25 | 976 - 1035 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_87 | 602 | 3e-25 | 537 - 596 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38249 | 702 | 5e-23 | 647 - 702 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_79 | 1120 | 2e-22 | 726 - 783 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_25 | 939 | 2e-22 | 571 - 628 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_319 | 724 | 6e-22 | 605 - 664 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_37256 | 547 | 8e-21 | 484 - 541 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_342 | 1417 | 8e-21 | 1034 - 1091 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_226 | 691 | 8e-21 | 511 - 568 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_114 | 974 | 8e-21 | 593 - 650 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_81 | 589 | 8e-21 | 522 - 579 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_75 | 1141 | 8e-21 | 746 - 803 | 97 | 56 / 58 | plus |
Contig Sequence (602 bp)
>U35_87 602 Hv_44K_v2 CAAAACCAGGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGCAC TCCTCGTCATTGCGGCAACAAGTACGATTGCACAGCAACAACCATTTCCACAACAATACA ACCATTTCCACAGCAACCACCATTTGGGCTACAACAACCAATTCTATCGCAGCAACAACC ATGTACACCACAACAAACACCACTCCCACAAGGACAACTGTATCAAACGCTTCTGCAACT ACAAATACCCTATGTTCATCCATCTATATTGCAACAGCTAAACCCATGCAAGGTATTCCT CCAGCAGCAGTGCAGCCCCGTGCGAATGCCACAACTTATTGCTAGGTTGCAAATGTTGCA GCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAGCAACTGCCGCAAATCTCCGA ACAATTCCGCCATGAGGCAATCCGTGCAATCGTCTACTCTATCTTTCTGCAAGAACAACC CCAACAGTCGGTCCAAGGTGTATCCCAAACCCAACAACAGTTGCAGCAGGAGCAAGTTGG ACAATGTTCTTTCCAACAACCTCAACCACAACAACTTGGTCAAGCACAACAGGTACCACA AA
Homology of Contig U35_87 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |