barSeed - Barley Seed Development Database

Probe CUST_7655_PI390587928

Source Contig U35_206

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7655_PI390587928	Hv_44K_v2	AAGTCGGAAAATGTTCTTTCCAACAACCTCAACCACAACAGGGTCAACAACAGCAAGTGC	537	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.014	0.014	0.178	2.559	5.623	8.280
Raw	78.795	109.839	1827.784	36576.200	30285.233	48376.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30835.1	717	7e-23	252 - 311	98	59 / 60	plus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
MLOC	MLOC_355.1	568	7e-23	38 - 97	98	59 / 60	plus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012
JLOC1	JLOC1_20348.1	626	4e-23	252 - 311	98	59 / 60	plus
JLOC1	JLOC1_226.1	512	4e-23	38 - 97	98	59 / 60	plus
Harvest21	ABC43850	600	3e-25	536 - 595	100	60 / 60	plus
Harvest21	ABC00556	682	3e-25	347 - 406	100	60 / 60	plus
Harvest21	ABC00530	1096	3e-25	710 - 769	100	60 / 60	plus	ABC00530
Harvest21	ABC37418	411	1e-23	59 - 118	98	59 / 60	plus
Harvest21	ABC34484	676	1e-23	417 - 476	98	59 / 60	plus
Harvest21	ABC34324	711	1e-23	563 - 622	98	59 / 60	plus
Harvest21	ABC34299	678	1e-23	452 - 511	98	59 / 60	plus
Harvest21	ABC34033	632	1e-23	369 - 428	98	59 / 60	plus
Harvest21	ABC32949	440	1e-23	57 - 116	98	59 / 60	plus	ABC32949
Harvest21	ABC29810	599	1e-23	220 - 279	98	59 / 60	plus
Harvest21	ABC00811	560	1e-23	152 - 211	98	59 / 60	plus	ABC00811
Harvest21	ABC00799	681	1e-23	613 - 672	98	59 / 60	plus
Harvest21	ABC00793	1091	1e-23	689 - 748	98	59 / 60	plus	ABC00793
Harvest21	ABC00783	801	1e-23	613 - 672	98	59 / 60	plus
Harvest21	ABC00781	1172	1e-23	770 - 829	98	59 / 60	plus
Harvest21	ABC00765	1240	1e-23	903 - 962	98	59 / 60	plus	ABC00765
Harvest21	ABC00757	605	1e-23	453 - 512	98	59 / 60	plus
Harvest21	ABC00563	650	1e-23	562 - 621	98	59 / 60	plus
Harvest21	ABC00549	868	1e-23	529 - 588	98	59 / 60	plus	ABC00549
Harvest21	ABC00531	704	1e-23	529 - 588	98	59 / 60	plus
Harvest21	ABC00523	1235	1e-23	834 - 893	98	59 / 60	plus	ABC00523
Harvest21	ABC00506	1202	1e-23	806 - 865	98	59 / 60	plus
Harvest21	ABC00502	1071	1e-23	684 - 743	98	59 / 60	plus	ABC00502
Harvest21	ABC00305	1030	1e-23	683 - 742	98	59 / 60	plus
Harvest21	ABC00302	713	1e-23	567 - 626	98	59 / 60	plus
Harvest21	ABC00301	970	1e-23	575 - 634	98	59 / 60	plus	ABC00301
Harvest21	ABC00259	1011	1e-23	620 - 679	98	59 / 60	plus
Harvest21	ABC00211	1515	1e-23	796 - 855	98	59 / 60	plus
Harvest21	ABC00776	600	2e-22	543 - 600	98	57 / 58	plus
Harvest21	ABC44727	531	6e-22	346 - 405	97	58 / 60	minus	ABC44727
Harvest21	ABC00577	1091	6e-22	693 - 752	97	58 / 60	plus
Harvest21	ABC00567	616	6e-22	218 - 277	97	58 / 60	plus	ABC00567
Harvest21	ABC00540	977	6e-22	586 - 645	97	58 / 60	plus	ABC00540
Harvest21	ABC29837	681	2e-21	583 - 641	97	58 / 60	plus
Harvest21	ABC52941	477	8e-21	186 - 243	97	56 / 58	plus
Harvest35	U35_215	683	3e-25	347 - 406	100	60 / 60	plus
Harvest35	U35_206	602	3e-25	538 - 597	100	60 / 60	plus
Harvest35	U35_38357	678	1e-23	452 - 511	98	59 / 60	plus
Harvest35	U35_38176	632	1e-23	369 - 428	98	59 / 60	plus
Harvest35	U35_30098	599	1e-23	220 - 279	98	59 / 60	plus
Harvest35	U35_332	559	1e-23	152 - 211	98	59 / 60	plus
Harvest35	U35_318	977	1e-23	718 - 777	98	59 / 60	plus
Harvest35	U35_314	1235	1e-23	924 - 983	98	59 / 60	plus
Harvest35	U35_313	934	1e-23	543 - 602	98	59 / 60	plus
Harvest35	U35_303	605	1e-23	453 - 512	98	59 / 60	plus
Harvest35	U35_207	905	1e-23	581 - 640	98	59 / 60	plus
Harvest35	U35_204	706	1e-23	529 - 588	98	59 / 60	plus
Harvest35	U35_197	1206	1e-23	806 - 865	98	59 / 60	plus
Harvest35	U35_196	685	1e-23	617 - 676	98	59 / 60	plus
Harvest35	U35_115	711	1e-23	563 - 622	98	59 / 60	plus
Harvest35	U35_88	720	1e-23	620 - 679	98	59 / 60	plus
Harvest35	U35_82	1085	1e-23	685 - 744	98	59 / 60	plus
Harvest35	U35_68	955	1e-23	742 - 801	98	59 / 60	plus
Harvest35	U35_24	729	1e-23	583 - 642	98	59 / 60	plus
Harvest35	U35_7	828	1e-23	761 - 820	98	59 / 60	plus
Harvest35	U35_211	984	6e-22	586 - 645	97	58 / 60	plus

Contig Sequence (602 bp)

>U35_206 602 Hv_44K_v2
GAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGCACTCCTCGTCA
TTGCGGCAACAAGTACGTTTGCACAGCAACAACCATTTCCACAACAACCCTTCCCATCAC
AACAACCATTTCCGCAACAACCACCATTTTGGCAACAACAACCAATTCTATCGCAGCAAC
TTTTATGTACACCACAACAAACACCACTCCCACAAGGACAACAAGATCAAATGCTTGTGC
AAGTACAAATACCATTTGTTCATCCATCTATTTTGCAGCAGCTAAACCCATGCAAGGTAT
TCCTCCAGCAGCAGTGCAGCCCTGTGGCAATGTCACAACGTATTGCAAGGTCGCAAATGT
TGCAACAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAACAACTGCCGCAAATCC
CCGAACAACTCCGCCATGAGGCAGTCCGTGCAATCGTCTACTCTATCGTCCTGCAAGAAC
AATCCCTACAATTGGTCCAAGGTGTCTCCCAACCCCAACAACAGTCACAACAGCAACAAG
TCGGAAAATGTTCTTTCCAACAACCTCAACCACAACAGGGTCAACAACAGCAAGTGCCAC
AG

Homology of Contig U35_206 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None