barSeed - Barley Seed Development Database

Probe CUST_15916_PI390587928

Source Contig U35_90

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15916_PI390587928	Hv_44K_v2	ACAATTCCGCCATGAGGCAATCCGTGCAATCGTCTACTCTATCTTTTTGCAAGAACAACC	439	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.013	0.013	0.160	2.628	6.345	9.174
Raw	57.832	82.286	1499.112	34923.967	30632.733	48917.167

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22764.1	1083	7e-23	411 - 470	98	59 / 60	minus	ABC00069 ABC00241 ABC00282 ABC00295 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC53012
MLOC	MLOC_22496.1	998	7e-23	606 - 665	98	59 / 60	minus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
MLOC	MLOC_6381.1	1035	7e-23	432 - 491	98	59 / 60	minus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC53012
JLOC1	JLOC1_15771.1	1131	4e-23	459 - 518	98	59 / 60	minus
JLOC1	JLOC1_15597.1	860	4e-23	468 - 527	98	59 / 60	minus
JLOC1	JLOC1_4154.1	1067	4e-23	455 - 514	98	59 / 60	minus
Harvest21	ABC00266	565	3e-25	440 - 499	100	60 / 60	plus
Harvest21	ABC00241	1119	3e-25	608 - 667	100	60 / 60	plus	ABC00241
Harvest21	ABC52780	668	1e-23	519 - 578	98	59 / 60	plus
Harvest21	ABC52772	597	1e-23	519 - 578	98	59 / 60	plus
Harvest21	ABC52707	645	1e-23	359 - 418	98	59 / 60	plus
Harvest21	ABC45027	540	1e-23	385 - 444	98	59 / 60	plus
Harvest21	ABC43627	629	1e-23	519 - 578	98	59 / 60	plus
Harvest21	ABC34461	633	1e-23	399 - 458	98	59 / 60	plus
Harvest21	ABC34159	548	1e-23	429 - 488	98	59 / 60	plus
Harvest21	ABC34137	702	1e-23	531 - 590	98	59 / 60	plus
Harvest21	ABC34056	620	1e-23	505 - 564	98	59 / 60	plus
Harvest21	ABC33110	491	1e-23	386 - 445	98	59 / 60	plus
Harvest21	ABC32998	547	1e-23	366 - 425	98	59 / 60	plus
Harvest21	ABC32822	570	1e-23	451 - 510	98	59 / 60	plus
Harvest21	ABC32670	450	1e-23	333 - 392	98	59 / 60	plus
Harvest21	ABC32538	494	1e-23	67 - 126	98	59 / 60	plus
Harvest21	ABC32454	684	1e-23	513 - 572	98	59 / 60	plus
Harvest21	ABC32292	582	1e-23	463 - 522	98	59 / 60	plus
Harvest21	ABC00822	1417	1e-23	916 - 975	98	59 / 60	plus	ABC00822
Harvest21	ABC00818	1411	1e-23	860 - 919	98	59 / 60	plus
Harvest21	ABC00798	631	1e-23	509 - 568	98	59 / 60	plus
Harvest21	ABC00795	785	1e-23	615 - 674	98	59 / 60	plus
Harvest21	ABC00785	999	1e-23	489 - 548	98	59 / 60	plus	ABC00785
Harvest21	ABC00763	763	1e-23	582 - 641	98	59 / 60	plus
Harvest21	ABC00585	920	1e-23	454 - 513	98	59 / 60	plus	ABC00585
Harvest21	ABC00582	689	1e-23	393 - 452	98	59 / 60	plus
Harvest21	ABC00548	638	1e-23	473 - 532	98	59 / 60	plus
Harvest21	ABC00543	1036	1e-23	516 - 575	98	59 / 60	plus
Harvest21	ABC00524	874	1e-23	647 - 706	98	59 / 60	plus	ABC00524
Harvest21	ABC00516	993	1e-23	478 - 537	98	59 / 60	plus	ABC00516
Harvest21	ABC00296	861	1e-23	477 - 536	98	59 / 60	plus
Harvest21	ABC00292	684	1e-23	475 - 534	98	59 / 60	plus
Harvest21	ABC00285	1008	1e-23	491 - 550	98	59 / 60	plus
Harvest21	ABC00282	1112	1e-23	606 - 665	98	59 / 60	plus	ABC00282
Harvest21	ABC00269	768	1e-23	590 - 649	98	59 / 60	plus
Harvest21	ABC00264	895	1e-23	601 - 660	98	59 / 60	plus
Harvest21	ABC00258	597	1e-23	416 - 475	98	59 / 60	plus
Harvest21	ABC00252	701	1e-23	544 - 603	98	59 / 60	plus
Harvest21	ABC00243	589	1e-23	404 - 463	98	59 / 60	plus
Harvest21	ABC00240	798	1e-23	471 - 530	98	59 / 60	plus
Harvest21	ABC00237	734	1e-23	60 - 119	98	59 / 60	minus
Harvest21	ABC00232	1132	1e-23	631 - 690	98	59 / 60	plus
Harvest21	ABC00214	698	1e-23	464 - 523	98	59 / 60	plus
Harvest21	ABC00069	963	1e-23	453 - 512	98	59 / 60	plus	ABC00069
Harvest21	ABC44012	492	6e-22	410 - 469	97	58 / 60	plus
Harvest21	ABC52821	563	2e-21	495 - 553	97	58 / 60	plus
Harvest35	U35_90	565	3e-25	440 - 499	100	60 / 60	plus
Harvest35	U35_79	1120	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_45148	629	1e-23	519 - 578	98	59 / 60	plus
Harvest35	U35_38477	633	1e-23	399 - 458	98	59 / 60	plus
Harvest35	U35_38249	702	1e-23	531 - 590	98	59 / 60	plus
Harvest35	U35_38194	620	1e-23	505 - 564	98	59 / 60	plus
Harvest35	U35_38169	608	1e-23	491 - 550	98	59 / 60	plus
Harvest35	U35_37256	547	1e-23	366 - 425	98	59 / 60	plus
Harvest35	U35_37155	570	1e-23	451 - 510	98	59 / 60	plus
Harvest35	U35_342	1417	1e-23	916 - 975	98	59 / 60	plus
Harvest35	U35_339	1379	1e-23	860 - 919	98	59 / 60	plus
Harvest35	U35_327	631	1e-23	509 - 568	98	59 / 60	plus
Harvest35	U35_319	724	1e-23	489 - 548	98	59 / 60	plus
Harvest35	U35_226	691	1e-23	393 - 452	98	59 / 60	plus
Harvest35	U35_213	638	1e-23	472 - 531	98	59 / 60	plus
Harvest35	U35_114	974	1e-23	475 - 534	98	59 / 60	plus
Harvest35	U35_87	602	1e-23	421 - 480	98	59 / 60	plus
Harvest35	U35_84	701	1e-23	544 - 603	98	59 / 60	plus
Harvest35	U35_81	589	1e-23	404 - 463	98	59 / 60	plus
Harvest35	U35_75	1141	1e-23	628 - 687	98	59 / 60	plus
Harvest35	U35_25	939	1e-23	453 - 512	98	59 / 60	plus

Contig Sequence (565 bp)

>U35_90 565 Hv_44K_v2
GATCAAAACCAAGAAACACTAGTTAACACCAATCCACCATGAAGACCTTTCTCATCTTTG
CACTCCTTGCCATTGCAGCAACAAGTACCATTGCACAACAACAACCATTTCCACAACAAC
CACCATTTTGGCAACAACAACCATTTCCACAACAACCACCATTTGGGCTACAACAACCAA
TTCTATTGCAGCAACAACTATGTACACCACAACAAACACCACTCCCACAAGGACAACTGT
ACCAAATGCTTATGCAACTACAAATACCCTATGTTCATCCATCTATTTTGCAACAGCTAA
ACCCATGCAAGGTATTCCTCCAGCAGCAATGCAGCCCCGTGCGAATGCCACAACTTATTG
CTAGGTCGCAAATGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAGC
AACTGCCGCAAATTCCCGAACAATTCCGCCATGAGGCAATCCGTGCAATCGTCTACTCTA
TCTTTTTGCAAGAACAACCCCAACAGTCGGTCCAAGGTGTCTCCCAACCCCAACAACAAT
TGCAGCAGGAGCAAGTCGGACAATG

Homology of Contig U35_90 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None