- Probe CUST_34594_PI390587928
- Source Contig U35_197
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34594_PI390587928 | Hv_44K_v2 | GGTGATAAATAAAGTGTCAACCTTATGTATGACCGGCCCAAACTTGATGTTTAAATTCTG | 1085 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.019 | 0.015 | 0.202 | 2.626 | 5.241 | 6.658 |
| Raw | 206.778 | 268.039 | 3806.452 | 66806.200 | 51317.733 | 70787.667 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_355.1 | 568 | 7e-23 | 318 - 377 | 98 | 59 / 60 | plus | ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52611 ABC52892 ABC53012 |
| JLOC1 | JLOC1_226.1 | 512 | 4e-23 | 318 - 377 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC52672 | 431 | 3e-25 | 346 - 405 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00793 | 1091 | 3e-25 | 969 - 1028 | 100 | 60 / 60 | plus | ABC00793 |
| Harvest21 | ABC00523 | 1235 | 3e-25 | 1114 - 1173 | 100 | 60 / 60 | plus | ABC00523 |
| Harvest21 | ABC00305 | 1030 | 3e-25 | 963 - 1022 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00259 | 1011 | 3e-25 | 900 - 959 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00506 | 1202 | 1e-24 | 1087 - 1145 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC37833 | 196 | 1e-23 | 50 - 109 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC37418 | 411 | 1e-23 | 340 - 399 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32949 | 440 | 1e-23 | 337 - 396 | 98 | 59 / 60 | plus | ABC32949 |
| Harvest21 | ABC29810 | 599 | 1e-23 | 500 - 559 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00811 | 560 | 1e-23 | 432 - 491 | 98 | 59 / 60 | plus | ABC00811 |
| Harvest21 | ABC00301 | 970 | 1e-23 | 855 - 914 | 98 | 59 / 60 | plus | ABC00301 |
| Harvest21 | ABC52844 | 174 | 6e-22 | 74 - 130 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC00556 | 682 | 2e-21 | 627 - 682 | 98 | 55 / 56 | plus | |
| Harvest35 | U35_197 | 1206 | 3e-25 | 1086 - 1145 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30098 | 599 | 1e-23 | 500 - 559 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_332 | 559 | 6e-22 | 432 - 491 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_215 | 683 | 6e-22 | 627 - 683 | 98 | 56 / 57 | plus |
Contig Sequence (1206 bp)
>U35_197 1206 Hv_44K_v2 GCACAACCATCAAAACCAAGAAACACTAGTTAATACCAATCCACCATGAAGACCTTCCTC ATCTTTGCACTCCTCGCCATTGTGGCAACAACTACCATTGCACAGCAACAACCATACCCA CAACAACCACAACCATTTCCACAACAACCCATCCCACAACAACCACAACCATACCCACAA CAACCACAACCATTTCCACAACAGCCCATCCCACAACAACCACAACCATACCCACAACAA CCACAACCATTTTCACAACAGCCCATCCCACAACAACCACAACCATACCCACAACAACCA CAACCATTTCCACAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCACAA CCATTTCCACAACAACCCTTCCCATCACAACAACCATTTCCGCAACAACCACCATTTTGG CAACAACAACCAATTCTATCGCAGCAACAACCATGTACACCACAACAAACACCACTCCCA CAAGGACAACAAGATCAAATGCTTGTGCAAGTACAAATACCATTTGTTCATCCATCTATT TTGCAGCAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCTGTGGCAATG TCACAACGTATTGCAAGGTCGCAAATGTTGCAACAGAGCAGTTGCCATGTGTTGCAGCAA CAATGTTGCCAACAACTGCCGCAAATCCCCGAACAACTCCGCCATGAGGCAGTCCGTGCA ATCGTCTACTCTATCGTCCTGCAAGAACAATCCCTACAATTGGTCCAAGGTGTCTCCCAA CCCCAACAACAGTCACAACAGCAACAAGTCGGACAATGTTCTTTCCAACAACCTCAACCA CAACAGGGTCAACAACAGCAAGTGCCACAGAGTGTTTTCTTGCAGCCACACCAAATAGCT CAACTTGAGGCGACAACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAGTGTTAAT GTGCCGTTGTACCGCATAGTGCCATTAGCCATTGACACCAGAGTTGGTGTCTAATGATAA GAAAAGGTCTCTAGAAATATATAGTTGAATCACCGTTGTTCAATCGAGGTATATGTCGAT GTAGCGGTGATAAATAAAGTGTCAACCTTATGTATGACCGGCCCAAACTTGATGTTTAAA TTCTGGAATAAAATATAAATAAAGTTTTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA
Homology of Contig U35_197 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |