barSeed - Barley Seed Development Database

Probe CUST_37671_PI390587928

Source Contig U35_81

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37671_PI390587928	Hv_44K_v2	GTCGGACAATGTTATTTCCAACAACCTCAACCACAACAACTTGGTCAACCACAACAGGTA	518	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.013	0.014	0.167	2.857	6.595	10.550
Raw	39.211	68.958	962.200	23450.367	19703.700	34448.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22764.1	1083	2e-24	296 - 355	100	60 / 60	minus	ABC00069 ABC00241 ABC00282 ABC00295 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC53012
MLOC	MLOC_22496.1	998	7e-23	491 - 550	98	59 / 60	minus	ABC00069 ABC00241 ABC00282 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC44727 ABC52892 ABC53012
JLOC1	JLOC1_15771.1	1131	8e-25	344 - 403	100	60 / 60	minus
JLOC1	JLOC1_15597.1	860	4e-23	353 - 412	98	59 / 60	minus
Harvest21	ABC32998	547	3e-25	481 - 540	100	60 / 60	plus
Harvest21	ABC32847	498	3e-25	140 - 199	100	60 / 60	plus
Harvest21	ABC00822	1417	3e-25	1031 - 1090	100	60 / 60	plus	ABC00822
Harvest21	ABC00582	689	3e-25	508 - 567	100	60 / 60	plus
Harvest21	ABC00543	1036	3e-25	631 - 690	100	60 / 60	plus
Harvest21	ABC00524	874	3e-25	762 - 821	100	60 / 60	plus	ABC00524
Harvest21	ABC00296	861	3e-25	592 - 651	100	60 / 60	plus
Harvest21	ABC00292	684	3e-25	590 - 649	100	60 / 60	plus
Harvest21	ABC00285	1008	3e-25	606 - 665	100	60 / 60	plus
Harvest21	ABC00264	895	3e-25	716 - 775	100	60 / 60	plus
Harvest21	ABC00243	589	3e-25	519 - 578	100	60 / 60	plus
Harvest21	ABC00240	798	3e-25	586 - 645	100	60 / 60	plus
Harvest21	ABC00232	1132	3e-25	746 - 805	100	60 / 60	plus
Harvest21	ABC00214	698	3e-25	579 - 638	100	60 / 60	plus
Harvest21	ABC32538	494	1e-23	182 - 241	98	59 / 60	plus
Harvest21	ABC00516	993	1e-23	593 - 652	98	59 / 60	plus	ABC00516
Harvest21	ABC00269	768	1e-23	705 - 764	98	59 / 60	plus
Harvest21	ABC00241	1119	1e-23	723 - 782	98	59 / 60	plus	ABC00241
Harvest21	ABC00069	963	1e-23	568 - 627	98	59 / 60	plus	ABC00069
Harvest21	ABC52707	645	6e-22	474 - 533	97	58 / 60	plus
Harvest21	ABC32454	684	6e-22	628 - 684	98	56 / 57	plus
Harvest21	ABC00282	1112	6e-22	721 - 780	97	58 / 60	plus	ABC00282
Harvest35	U35_37256	547	3e-25	481 - 540	100	60 / 60	plus
Harvest35	U35_226	691	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_114	974	3e-25	590 - 649	100	60 / 60	plus
Harvest35	U35_81	589	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_75	1141	3e-25	743 - 802	100	60 / 60	plus
Harvest35	U35_79	1120	1e-23	723 - 782	98	59 / 60	plus
Harvest35	U35_25	939	1e-23	568 - 627	98	59 / 60	plus
Harvest35	U35_342	1417	6e-22	1031 - 1090	97	58 / 60	plus

Contig Sequence (589 bp)

>U35_81 589 Hv_44K_v2
GATCAAAACCAAGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTG
CACTCCTCGCCATTGCGGCAACAAGTACGATTGCACAGCAACAACCATTTCCACATCAAC
CACCATTTGGGCTACAACAACCAATTCTATCGCAACAACAACCATGTACACCACAACAAA
CACCACTCCCACAAGGACAACTGTACCAAACGCTTCTGCAACTACAAATACCCTATGTTC
AACCATCTATTTTGCAACAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCC
CCGTGCGAATGCCACAACTTATTGCTAGGTCGCAAATGTTGCAGCAGAGCAGCTGCCATG
TGTTGCAGCAACAATGTTGCCAGCAACTGCCGCAAATCCCCGAACAATTCCGCCATGAGG
CAATCCGTGCAATCGTCTACTCTATCTTTCTGCAAGAACAACCCCAACAGTCGGTCCAAG
GTGTCTCCCAACCCCAACAACAGTTGCAGCAGGAGCAAGTCGGACAATGTTATTTCCAAC
AACCTCAACCACAACAACTTGGTCAACCACAACAGGTACCACAGAGTGT

Homology of Contig U35_81 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None