- Probe CUST_13612_PI390587928
- Source Contig U35_342
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13612_PI390587928 | Hv_44K_v2 | ATGTAGCGGTGACAAATAAAGTGTCACACAACCTTATGTGTGACCAGCCGAAACTAGTTG | 1292 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.021 | 0.030 | 0.184 | 2.854 | 6.664 | 12.183 |
| Raw | 36.676 | 89.602 | 502.397 | 10987.680 | 9324.543 | 18734.100 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22764.1 | 1083 | 2e-24 | 34 - 93 | 100 | 60 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00295 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC53012 |
| JLOC1 | JLOC1_15771.1 | 1131 | 8e-25 | 82 - 141 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_50450.1 | 1084 | 6e-21 | 260 - 318 | 97 | 57 / 59 | minus | |
| Harvest21 | ABC32847 | 498 | 3e-25 | 402 - 461 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32534 | 543 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32263 | 455 | 3e-25 | 333 - 392 | 100 | 60 / 60 | plus | ABC32263 |
| Harvest21 | ABC00822 | 1417 | 3e-25 | 1293 - 1352 | 100 | 60 / 60 | plus | ABC00822 |
| Harvest21 | ABC00530 | 1096 | 3e-25 | 971 - 1030 | 100 | 60 / 60 | plus | ABC00530 |
| Harvest21 | ABC00232 | 1132 | 3e-25 | 1008 - 1067 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53012 | 868 | 2e-21 | 773 - 831 | 97 | 57 / 59 | plus | ABC53012 |
| Harvest21 | ABC00815 | 2900 | 2e-21 | 1485 - 1543 | 97 | 57 / 59 | plus | ABC00815 |
| Harvest21 | ABC00560 | 971 | 2e-21 | 846 - 904 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC00529 | 804 | 2e-21 | 687 - 745 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC00559 | 906 | 8e-21 | 790 - 847 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_36990 | 543 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36851 | 455 | 3e-25 | 333 - 392 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_342 | 1417 | 3e-25 | 1293 - 1352 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_114 | 974 | 3e-25 | 852 - 911 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_337 | 2900 | 2e-21 | 1485 - 1543 | 97 | 57 / 59 | plus |
Contig Sequence (1417 bp)
>U35_342 1417 Hv_44K_v2 TTAACAACCCACACATTGATTGCAACTTAGTCCTACACAAGTTTTCCATTCTTGTTTCAG GCTAACAACCTATACAAGGTTCCAAAATCATGCAAAAGTGATGCTAGGTTGATAATGTGT GACATGTAAAGTGAATAAGGTGAGTCATGCATACCAAACCTCGGGATTTCTATACTTTGT GTATGATCATATGCACAACTAAAAGGCAACTTTGATTATCAATTGAAAAGTACCGCTTGT AGCTTGTGCAACCTAACACAATGTCCAAAAATCCATTTGCAAAAGCATCCAAACACAATT GTTAAAGCTGTTCAAACAAACAAAGAAGAGATGAAGCCTGGCTACTATAAATAGGCAGGT AGTATAGAGATCTACACAAGCACAAGCGACAAAACCAAGAAACACTAGTTAACACCAATC CACTATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATTGCGGCAACAAGTACGATTGC ACAGCAACAACCATTTCCACAACAACCCATCCCACAACAGCCACAACCATACCCACAACA ACCACAACCATATCCACAACAACCCTTCCCACCGCAACAAGCATTTCCACAACAACCACC ATTTTGGCCACAACAACCATTTCCACAGCAACCACCATTTGGGCTACAACAACCAATTCT ATCGCAACAACAACCATGTACACCACAACAAACACCACTCCCACAAGGACAACTGTACCA AACGCTTCTGCAACTACAAATACCCTATGTTCAACCATCTATTTTGCAACAGCTAAACCC ATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCCGTGCGAATGCCACAACTTATTGCTAG GTCGCAAATGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAGCAACT GCCGCAAATCCCCGAACAATTCCGCCATGAGGCAATCCGTGCAATCGTCTACTCTATCTT TCTGCAAGAACAACCCCAACAGTCGGTCCAAGGTGTCTCCCAACCCCAACAACAGTTGCA GCAGGAGCAAGTCGGACAATGTTCTTTCGAACAACCTCAACCACAACAACTTGGTCAACC ACAACAGGTACCACAGAGTGTTTTCTTGCAGCCACACCAGATAGCTCAGCTTGAGGCGAC GACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAATGTTAATGTGCCATTGTATGA CATCATGCCATTCGGCGTTGGCACTAGAGTTGGTGTCTAATGATAAGAAAAGGTCTCTAG AAATATATAGTTGGATCCGGTTGTTCTAGTCGATGTAGCGGTGACAAATAAAGTGTCACA CAACCTTATGTGTGACCAGCCGAAACTAGTTGTTTAAATTTTGAAATAAATATAAATAAA GTTCATGACGACTATCTGAAAAGTTTCTCGAACAAGT
Homology of Contig U35_342 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |