- Probe CUST_13650_PI390587928
- Source Contig U35_313
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13650_PI390587928 | Hv_44K_v2 | TGTCACACAACCTTATGTGTGACCGACCCAGACTTGATGTTTAAATTCTGGAATAAAATA | 836 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.015 | 0.014 | 0.196 | 2.519 | 4.876 | 6.619 |
| Raw | 68.346 | 125.987 | 1815.801 | 31223.533 | 23328.833 | 34644.300 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_32335.1 | 339 | 7e-23 | 180 - 239 | 98 | 59 / 60 | minus | ABC00301 ABC00502 ABC00523 ABC00540 ABC00567 ABC00793 ABC00811 ABC32949 |
| JLOC1 | JLOC1_21110.1 | 329 | 4e-23 | 170 - 229 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC52836 | 583 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00502 | 1071 | 3e-25 | 978 - 1037 | 100 | 60 / 60 | plus | ABC00502 |
| Harvest21 | ABC00577 | 1091 | 1e-23 | 987 - 1046 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00567 | 616 | 1e-23 | 512 - 571 | 98 | 59 / 60 | plus | ABC00567 |
| Harvest21 | ABC00540 | 977 | 1e-23 | 880 - 939 | 98 | 59 / 60 | plus | ABC00540 |
| Harvest35 | U35_50595 | 583 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_313 | 934 | 3e-25 | 837 - 896 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_211 | 984 | 1e-23 | 880 - 939 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_82 | 1085 | 1e-23 | 979 - 1038 | 98 | 59 / 60 | plus |
Contig Sequence (934 bp)
>U35_313 934 Hv_44K_v2 AATCAACACTAGTTAATACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTCGC CATTGTGGCAACAAGTACCATTGCGCAGCAACAACCATATCCACAACAACCACAACCATT TCCACAACAACCCTTTCCGCAACAACCACCATTTTGGCAACAACAACCAATTATATCGCA GCAACAACCATGTACACCACAACAAACACCACTCCCACAAGGACAACAAGATCAAATGCT TGTGCAAGTACAAATACCATTTGTTCATCCATCTATTTTGCAGCAGCTAAACCCATGCAA GGTATTCCTCCAGCAGCAGTGCAGCCCTGTGGCAATGTCACAACGTATTGCAAGGTCGCA AATGTTGCAGCAGAGCAGTTGCTATGTGTTGCAGCAACAATGTTGCCAACAACTGCCGCA AATCCCCGAACAATTCCGCCATGAGGCAGTCCGTGCAATCGTCTACTCTATCGTCCTGCA AGAACAACCCCAACAATTGGTCCAAGGTGTCTCCCAACCCCAACAACAGTCGCAGCTACA TCAAGTCGGACAATGTTCTTTCCAACAACCTCAACCACAACAGGGTCAACAACAGCAAGT GCCACAGAGTGTTTTCTTGCAGCCACTCCAGCTAGCTCAGCTTGAAGCGACGGCTTCCAT TGCGCTGCGTACCCTACCAATGATGTGCAGTGTTAATGTGCCGTTCTACCGCATACTTCC ATTCGGCATTGACACGAGAGTTGGTGTCTAATGATAAGAAAAGGTCTCTATAAATATATA GTTAAATCACCGTTGTTTAATCGAGGTATATGTCGATGTAGCGGTGACAAATAAAGTGTC ACACAACCTTATGTGTGACCGACCCAGACTTGATGTTTAAATTCTGGAATAAAATATAAA TAAAGTTTTATCTGGACAATATTCAAATTGAAAA
Homology of Contig U35_313 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |