- Probe CUST_7619_PI390587928
- Source Contig U35_226
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7619_PI390587928 | Hv_44K_v2 | TGCGTACCCTACCAACGATGTGCAATGTTAATGTGCCATTGTATGACATCATGCCATTCG | 631 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.017 | 0.015 | 0.180 | 2.400 | 4.830 | 7.148 |
| Raw | 294.452 | 425.616 | 5513.293 | 101325.433 | 74921.133 | 123609.100 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22764.1 | 1083 | 2e-24 | 172 - 231 | 100 | 60 / 60 | minus | ABC00069 ABC00241 ABC00282 ABC00295 ABC00301 ABC00502 ABC00516 ABC00523 ABC00524 ABC00530 ABC00540 ABC00549 ABC00567 ABC00585 ABC00765 ABC00785 ABC00793 ABC00811 ABC00815 ABC00822 ABC32263 ABC32949 ABC37919 ABC53012 |
| JLOC1 | JLOC1_15771.1 | 1131 | 8e-25 | 220 - 279 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC32847 | 498 | 3e-25 | 264 - 323 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32534 | 543 | 3e-25 | 300 - 359 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32263 | 455 | 3e-25 | 195 - 254 | 100 | 60 / 60 | plus | ABC32263 |
| Harvest21 | ABC00822 | 1417 | 3e-25 | 1155 - 1214 | 100 | 60 / 60 | plus | ABC00822 |
| Harvest21 | ABC00543 | 1036 | 3e-25 | 755 - 814 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00296 | 861 | 3e-25 | 716 - 775 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00285 | 1008 | 3e-25 | 730 - 789 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00240 | 798 | 3e-25 | 710 - 769 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00232 | 1132 | 3e-25 | 870 - 929 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00582 | 689 | 4e-24 | 632 - 689 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC00264 | 895 | 5e-23 | 840 - 895 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_36990 | 543 | 3e-25 | 300 - 359 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36851 | 455 | 3e-25 | 195 - 254 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_342 | 1417 | 3e-25 | 1155 - 1214 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_226 | 691 | 3e-25 | 632 - 691 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_114 | 974 | 3e-25 | 714 - 773 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_75 | 1141 | 3e-25 | 867 - 926 | 100 | 60 / 60 | plus |
Contig Sequence (691 bp)
>U35_226 691 Hv_44K_v2 ACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATTGCG GCAACAAGTACGATTGCACAGCAACAACCATTTCCACAACAACCCATCCCACAACAGCCA CAACCATACCCACAACAACCACAACCATATCCACAACAACCCTTCCAACCGCAACAACCA TTTCCACAACTGTACCAAACGCTTCTGCAACTACAAATACCCTATGTTCAACCATCTATT TTGCAACAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAGTGCAGCCCCGTGCGAATG CCACAACTTATTGCTAGGTCGCAAATGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAA CAATGTTGCCAGCAACTGCCGCAAATCCCCGAACAATTCCGCCATGAGGCAATCCGTGCA ATCGTCTACTCTATCTTTCTGCAAGAACAACCCCAACAGTCGGTCCAAGGTGTCTCCCAA CCCCAACAACAGTTGCAGCAGGAGCAAGTCGGACAATGTTATTTCCAACAACCTCAACCA CAACAACTTGGTCAACCACAACAGGTACCACAGAGTGTTTTCTTGCAGCCACACCAGATA GCTCAGCTTGAGGCGACGACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAATGTT AATGTGCCATTGTATGACATCATGCCATTCG
Homology of Contig U35_226 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |