barSeed - Barley Seed Development Database

Probe ABC01497

Source Contig ABC01497

barSeed

Links

Affymetrix Source Sequence (900 bp)

>ABC01497 900
CATCCGAATGGAGCTCATTCTGGCTGAGTTTTCTACCGAGTTGCCACATTTGAGGGCATG
CAATTGAAGAATACACCACTTTTTTCCAACGATACTAGAACAATAATTTGATGTCCTAAC
CATCAAGATCAACTTCGGCATGTATGGTCTCTAGAAGTTACTATTGACCATCATTGGTGC
ATCTTGTAAGGATATACACCTAGAAGTGTGTGGGCGTGATTTACAACTCACTAACAGAGC
TGCTCAGGCTCGCGACCGAGATGAACGTCCTCGGCGATGGTGGTGCCGCGTGTGAGATCC
TCCTCCCTAACAAGGCCGTTGCTGCATCATCTACTCTCTGCCATTGGATCCCCTCCTCTC
CGACAAGGCCACCATCGGATCCCCTCTTCTCCGACAAGGCCATGGTGAGCACCCCTCCGG
CCGAGTCCGCCTCGGCTCCGGTCTCGGCGCTCGCAGCTCTGGTCGTACAAGTGCCTAATA
TAACCTCCCTTGTCTCCCTTCGCGGATCATCTCCAAGAAGAACCGCCTGAGATCTACATG
TACCTCTTCGAGGCACATCCAAGGAAGGAAGGAGATTGAGGTCGCCGCCTCTTGAAGCAT
GCTCGTCGTCGAGAGAGGGAAGGGCAACCTGGCGGCAATGGCAAGAGCATATTGTGCAGA
GGGAGAGGATGAGAAGAAACTAGTGGTTCTCATCCAATCTTCGTGGAACTCTCTTTATGT
GTGATTGTGCACTTGTTGGGTCCTTTTTCTGTGCGCTTGCACCTGCATAAGTATTCTGTT
GTGCACATGTAAAATTATTTTGATGTGTCCTTGTTAGGCGTTGAACCTTAATGCGTGGAG
TCGGTGGATGATGTATTGTATTTGATGTGATATGCTATTGAAATGAAATATACATTTTAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_23576.1	645	8e-174	306 - 642	99	336 / 338	None	ABC01494 ABC01497
MLOC_23576.2	1286	8e-174	947 - 1283	99	336 / 338	None	ABC01494 ABC01497
MLOC_1272.1	344	4e-137	1 - 307	95	293 / 307	None	ABC01494 ABC01497
MLOC_23577.1	279	3e-123	37 - 279	99	242 / 243	None	ABC01494 ABC01497
AK374695	634	2e-116	360 - 630	95	257 / 271	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK365264	1315	1e-112	1043 - 1311	94	253 / 269	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK359738	1264	3e-109	992 - 1260	93	251 / 269	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK250595.1	856	3e-108	586 - 852	93	249 / 267	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK249247.1	750	4e-107	460 - 727	93	249 / 268	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_28160.1	929	9e-104	448 - 715	92	247 / 268	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK250016.1	2853	2e-101	2580 - 2849	91	247 / 270	None	ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC30943 ABC34978 ABC34989 ABC38349 ABC44562 ABC44948 ABC45569
AK252837.1	2740	2e-100	2479 - 2736	92	246 / 267	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
AK362032	681	2e-100	411 - 672	92	241 / 262	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	2e-100	427 - 688	92	241 / 262	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_60076.1	511	9e-99	1 - 244	93	228 / 244	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_30440.1	361	9e-99	92 - 349	92	245 / 267	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_64313.1	278	6e-91	6 - 259	90	241 / 267	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
AK372031	1366	2e-90	1069 - 1312	91	223 / 244	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
MLOC_7526.1	208	1e-72	15 - 208	92	181 / 196	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334
MLOC_61318.1	383	4e-72	185 - 383	91	182 / 199	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
MLOC_1624.1	232	3e-68	4 - 224	88	195 / 221	None	ABC01497 ABC05172 ABC06188 ABC12128 ABC13360 ABC16799 ABC17513 ABC21924 ABC24067 ABC33341 ABC38349 ABC46334
AK372300	1091	2e-66	621 - 785	95	156 / 165	CUST_2501_PI390587928 CUST_35249_PI390587928 CUST_1342_PI390587928	ABC01494 ABC01497
MLOC_81791.1	171	2e-65	5 - 171	94	157 / 167	CUST_30308_PI390587928	ABC01497 ABC05171 ABC05174 ABC05304 ABC06188 ABC12127 ABC12988 ABC13209 ABC13836 ABC19962 ABC21351 ABC24067 ABC30081 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC44948 ABC45569
MLOC_41555.1	209	1e-63	9 - 171	94	153 / 163	None	ABC01494 ABC01497
AK359798	2572	5e-62	128 - 290	93	152 / 163	CUST_1960_PI390587928	ABC01494 ABC01497 ABC05377 ABC08513 ABC13191 ABC21257 ABC30713 ABC47321
AK251926.1	1428	5e-62	212 - 374	93	152 / 163	CUST_31687_PI390587928 CUST_31686_PI390587928 CUST_1960_PI390587928 CUST_35249_PI390587928 CUST_19680_PI390587928	ABC01494 ABC01497 ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC46208 ABC47321
MLOC_33574.1	258	6e-61	76 - 258	90	170 / 189	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_25753.1	329	5e-57	1 - 145	94	137 / 145	None	ABC01497
MLOC_29781.1	258	2e-56	1 - 153	93	142 / 153	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC33341 ABC34989 ABC38349 ABC44562 ABC46334
AK250846.1	2265	6e-56	2125 - 2261	96	131 / 137	CUST_2110_PI390587928 CUST_8718_PI390587928 CUST_2499_PI390587928	ABC01497 ABC05171 ABC07805 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC50849
MLOC_58288.1	152	6e-56	1 - 152	93	141 / 152	CUST_8721_PI390587928	ABC01497 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC34978 ABC34989 ABC38349 ABC43152 ABC46334
MLOC_45851.3	838	6e-56	96 - 235	95	133 / 140	CUST_8717_PI390587928	ABC01494 ABC01497
MLOC_45851.7	1423	6e-56	96 - 235	95	133 / 140	CUST_8717_PI390587928	ABC01494 ABC01497