barSeed - Barley Seed Development Database

Probe ABC05304

Source Contig ABC05304

barSeed

Links

Affymetrix Source Sequence (1047 bp)

>ABC05304 1047
TCAAGGTCCGCCGGATCCGGAGCGCCCCCCCTTTTTTCCGCCCGATTTTTTTTTTTGACC
TAGCTCTGTGCCCGAATCCGTCGGAGCCCACGGCCGCGCGGGCTGGCGGCGTGGCGGGAG
GCCTGGATCTGCGCGGTTCTGATTGAGGAATTTTTGTTTTTGTAGGATCTGGATGTGGCT
ATCGTGAAGGCTACTAACCACGTGGAGTGCCCGCCCAAGGAGCGCCACCTGCGCAAGATT
GCTGCGGCGACGTCCATCGCGAGGCCACGGGCAGACATCGCCTACTGCATCCACGCTCTC
TCTCGCCGTCTCTCCAAGACCCGCAACTGGATTGTAGCACTAAAGACACTTGTAGTGGTT
CATAGGCTTCTACGAGAGGGGGACCCTACATTTCGGGAAGAGCTTCTTAATTTTACACAA
AGGGGGCGTATTCTGCAGCTCTCAAACTTCAAGGATGACTCCAGTCCAATTGCTTGGGAC
TGTTCCGCATGGGTTCGCACATATGGTCAGTTTTTGGAGGAAAGATTGGAATGCTTCAGG
ATCCTGAAATAAGATGTTGAGGCTGAGCGTTTATCCAAACAAGGTCAAGATCCTGAAAAG
GGACACAGTAGAACCAGAGACCTAGATTCCCAGGATCTGTTAGAGCAATTACCAGCTTTG
CAGCAGTTACTGTATCGGCTTGTTGGATGTCGGCCAGAAGGAGCTGCGAATAATAACTAC
TTCGTGCAGTATGCTCTAGCTTTGGCGACAATGGCAAGAGCATATTGTGCAGAGGAAGAG
GATGAGAAGAAACTTGTGGTTCTCATCCAATCTTTGTGGAACTTTCTTTATGTGCGATTA
CGCACTTGTTGGGTCCTTTTTTCGTGCACTTGTACTTGCAGAAATATTCTGTTGTGCGCA
TGTAAAACTATTTTGATGTGCCCTTGTGCCCTTGTTAGGCGTTGAACCTTAATGCATGGA
GTCGTGGATGATGTTTTGTATTTATGTGATATGCTACTAAATGAAATATACATTTTATTT
GCAAAAAAAAAAAAAAAAAAAGAACTC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248501.1	2067	0.0	186 - 767	99	575 / 582	CUST_2500_PI390587928	ABC05304 ABC05305
MLOC_50084.1	579	5e-142	143 - 416	100	274 / 274	None	ABC05304 ABC05305
MLOC_30508.1	655	5e-122	1 - 250	98	246 / 250	None	ABC05304 ABC05305
MLOC_30508.2	624	8e-120	1 - 246	98	242 / 246	None	ABC05304 ABC05305
MLOC_30508.3	236	1e-113	1 - 235	98	231 / 235	None	ABC05304 ABC05305
MLOC_47936.1	379	5e-112	123 - 379	95	249 / 262	None	ABC05304 ABC05305
MLOC_47936.2	210	2e-96	1 - 210	97	204 / 210	None	ABC05304 ABC05305
AK249247.1	750	7e-96	463 - 747	89	261 / 293	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK374695	634	1e-93	360 - 634	89	253 / 283	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK250016.1	2853	2e-91	2580 - 2853	89	251 / 282	None	ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC30943 ABC34978 ABC34989 ABC38349 ABC44562 ABC44948 ABC45569
AK365264	1315	8e-90	1043 - 1313	89	248 / 279	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK370037	1546	3e-89	1293 - 1546	90	236 / 262	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK250595.1	856	1e-88	588 - 856	89	246 / 277	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK359738	1264	9e-85	997 - 1264	88	243 / 276	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_50845.1	469	1e-82	295 - 467	99	171 / 173	None	ABC05304 ABC05305
MLOC_60076.1	511	5e-82	1 - 244	89	225 / 252	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_73421.1	171	2e-76	4 - 171	98	164 / 168	None	ABC05304 ABC05305
AK252392.1	1995	2e-66	1759 - 1977	88	199 / 227	None	ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC34978 ABC44948
MLOC_30292.3	532	2e-65	171 - 309	99	138 / 139	None	ABC05304 ABC05305
MLOC_30292.4	422	2e-65	144 - 282	99	138 / 139	None	ABC05304 ABC05305
MLOC_30292.2	1071	2e-65	415 - 553	99	138 / 139	None	ABC05304 ABC05305
MLOC_30292.1	493	2e-65	172 - 310	99	138 / 139	None	ABC05304 ABC05305
MLOC_81791.1	171	2e-55	5 - 171	90	151 / 167	CUST_30308_PI390587928	ABC01497 ABC05171 ABC05174 ABC05304 ABC06188 ABC12127 ABC12988 ABC13209 ABC13836 ABC19962 ABC21351 ABC24067 ABC30081 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC44948 ABC45569
MLOC_47936.3	144	5e-52	27 - 144	98	116 / 118	None	ABC05304 ABC05305