barSeed - Barley Seed Development Database

Probe ABC05305

Source Contig ABC05305

barSeed

Links

Affymetrix Source Sequence (2051 bp)

>ABC05305 2051
AGCGCGCGGCGGCCGGAGCCGAACCCGGGGAAGGGGAAGGGGAAGGAGAAATGGCGTCGA
TGCAGAGCTGGCGCAAGGCGTACGGCGCCATCAAGGACACCACCACCGTCAGCCTCGCCA
ACATCAACTCCGACTTCAAGGATCTGGATGTGGCGATCGTGAAGGCGACTAACCACGTGG
AGTGCCCGCCCAAGGAGCGCCACCTGCGCAAGATTGCTGCGGCGACGTCCATCGCGAGGC
CACGGGCAGACATCGCCTACTGCATCCACGCTCTCTCTCGCCGTCTCTCCAAGACCCGCA
ACTGGATTGTAGCACTAAAGACACTTGTAGTGGTTCATAGGCTTCTACGAGAGGGGGACC
CTACATTTCGGGAAGAGCTTCTTAATTTTACACAAAGGGGGCGTATTCTGCAGCTCTCAA
ACTTCAAGGATGACTCCAGTCCAATTGCTTGGGACTGTTCCGCATGGGTTCGCACATATG
GTCAGTTTTTGGAGGAAAGATTGGAATGCTTCAGGATCCTGAAATATGATGTTGAGGCTG
AGCGTTTATCCAAACAAGGTCAAGGTCCTGAAAAGGGACACAGTAGAACCAGAGACCTAG
ATTCCCAGGATCTGTTAGAGCAGTTGCCAGCTTTGCAGCAGTTACTGTATCGGCTTGTTG
GATGTCGGCCAGAAGGAGCTGCGAATAATAACTACTTGGTGCAGTATGCTCTAGCTTTGG
TGTTAAAAGAGAGTTTCAAAATTTATTGCGCGATCAATGATGGAATTATTAACCTTGTTG
ATAAGTTTTTTGAGATGGCAAGACATGAAGCCCTTAAGGCCCTTGAAATTTACAGGAGGG
CTGGCCAACAGGCAGGGAATCTATCAGACTTTTATGAAAATTGCAGGGGTCTAGAACTTG
CGAGGAATTTTCAGTTTCCCACTCTGAGGGAGCCACCACAAACATTTCTTGTGACCATGG
AGGAGTACGTGAGGGACGCTCCGCGTATGGTTCCGGTTCGAGAGCCACTGGAATTTCCTG
AGAGGCTTCTTCTTACATATAAACCCGAAGAAGCAGAGGAAGTTTCTGTACCCGATCCTG
TCGAAGAGGAACAACCACCAGTTGAAGAACCTGTTCCAGTACAGTCCGTGCCCGAAGTTG
TTTCACCTCCTTCCAAGCCTGTTGTGGCTGATACTGGTGATCTACTGGGCTTAAATGATC
CGAGCCCTGCTGTATCAGCAATAGAGGAGAGCAATGCTCTTGCCTTGGCCATTATTCCAT
CAGATCCAAGTACTTCAACAACTAGCAGCACTACTTGGCAGGACAAAGGATTTGATCCAA
CAGGCTGGGAACTCGCCCTTGTTACTGCTCCAAGTAACACAAATTCGTCTGTTACAGATA
GTCAATTGGGTGGTGGACTTGACAAGCTCATCCTTGACAGCCTTTATGACGAGGGAGCCT
ACAGGCAGTCACAACAACAGCAGCTGTACGGTTCATCAGCTCCCAACCCATTCATGACAA
ACGATCCTTTCGCGATGTCGAATCACGTCGCCGCTCCGTCGTCAGTTCAAATGGCTGCCA
TGTCTCAGCAGCAGCAGCAGATCCCAACGATGATACATCAGAATCCCTTCGGGCCACCAA
TTCAGCCGCAGCATCCGGGCGCTGGCCCTGCAGCAGTAAACCCTTTCCTGGATAGCGGCT
TCGGCGCGTTCCCGGCGGCAAACAACCAACAACAGCAAGCCAACCCATTTGGTGGTAGCC
TTCTATAGGCTTGCAATAGGCGAGGAGCTGGAGCTAATAGTACCCCGAGCAAATGCGATT
TTTCGTGTGACTGTAATATGCATTGTGCCTGGCCATTCATGTATGTCTACCTGTGTAATG
ATATGTGTATTCGCTCCGCCACACGGGACTCTGCCAAGTGACCCTTGTTGTAAAGAAATG
TAGTGACCTGTGTAACACCAGATATATGTCAATAAACATTAGGACGTTGGCTATATAACA
AACGGCCGAGTATTTCGCTCGTTCCGTGCCGTGGCTGTTCAATTGCCATCTACCAAAAAA
AAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248501.1	2067	0.0	48 - 2067	99	2019 / 2020	CUST_2500_PI390587928	ABC05304 ABC05305
MLOC_64727.3	2238	0.0	220 - 1756	81	1245 / 1541	CUST_34460_PI390587928 CUST_34461_PI390587928	ABC05305 ABC47711
MLOC_66416.1	1683	0.0	342 - 989	99	647 / 648	CUST_2500_PI390587928	ABC05305
MLOC_79959.3	750	0.0	2 - 606	99	602 / 605	None	ABC05305
MLOC_79959.1	710	0.0	72 - 676	99	602 / 605	None	ABC05305
MLOC_64727.5	1888	0.0	5 - 1451	80	1162 / 1451	CUST_34460_PI390587928	ABC05305 ABC47711
MLOC_64727.4	960	0.0	184 - 960	84	651 / 777	None	ABC05305
MLOC_79959.2	586	6e-54	471 - 586	100	116 / 116	None	ABC05305
MLOC_64727.2	760	7e-158	231 - 758	86	453 / 528	None	ABC05305
MLOC_50845.1	469	6e-154	151 - 467	98	311 / 317	None	ABC05304 ABC05305
MLOC_50084.1	579	6e-134	142 - 416	98	270 / 275	None	ABC05304 ABC05305
MLOC_47936.1	379	1e-120	122 - 379	97	255 / 263	None	ABC05304 ABC05305
MLOC_30508.1	655	4e-120	1 - 250	98	245 / 250	None	ABC05304 ABC05305
MLOC_30508.2	624	7e-118	1 - 246	98	241 / 246	None	ABC05304 ABC05305
MLOC_30508.3	236	1e-111	1 - 235	98	230 / 235	None	ABC05304 ABC05305
MLOC_47936.2	210	8e-103	1 - 210	99	208 / 210	None	ABC05304 ABC05305
MLOC_73421.1	171	8e-83	4 - 171	100	168 / 168	None	ABC05304 ABC05305
MLOC_30292.3	532	5e-65	171 - 309	99	138 / 139	None	ABC05304 ABC05305
MLOC_30292.4	422	5e-65	144 - 282	99	138 / 139	None	ABC05304 ABC05305
MLOC_30292.2	1071	5e-65	415 - 553	99	138 / 139	None	ABC05304 ABC05305
MLOC_30292.1	493	5e-65	172 - 310	99	138 / 139	None	ABC05304 ABC05305
MLOC_47936.3	144	5e-55	27 - 144	100	118 / 118	None	ABC05304 ABC05305