barSeed - Barley Seed Development Database

Probe ABC13360

Source Contig ABC13360

barSeed

Links

Affymetrix Source Sequence (1521 bp)

>ABC13360 1521
GCTCGGAGCCACCATCCGCTAGGGTTTCTCTTTGGCGCCTCCGCCGCCACCGCCGCCAAC
CAATCTCCGCTCGCTTGATTAGGTGATCCCTCGACCCTGAAGCACTCCACCCCGAGCTTC
TCCTCCGGCCGTTGAGTGCCAAGAGTCTGCCACCGCACCGACGAGCGCCCCGAGATGCAT
CTCCCTCTGATGAGCGCTACGACATGCATCTGCCGCCGGCGAGCTTAGCTTCACCACCGA
CTCTACAAGTTTCCTCACCCGCTTTGAGCACTTTGCGGCCACTACCGCCCTGACATGCCC
CCGACCCCTGCATTGCCGTGGAAGCGAGCCTGCTGCTCCTCTCCCTCCCCAAGAACATCT
AAGCTACCGATGCAACGCCGACGCCCTAATTTGCCTCCCCTCCATCACAGAGGTGCATCT
GGTGGAGTGGCTCAAGATGATGGTGGGCATGAGAAAAGTTGAGGAGCGTTGAAGGACTGT
TTGGAGGCTCACTCACATGGTGTTACCATGCTAATCAAAGTGTTTTGATCAATATAACAC
ATGCTATTCCAGAAGATTTTAACATACTAACTAATGGTTTCTATAATTTTAACATATGCA
ATGTTCACTTATATCCATTATTCTTATCTATCAATATTGACTGATAATTTTATTGTAAAC
ATTCTCTTGATTTGTTGCTTGTTCTCTCATGTTCTAGTAGTAGATCACTATCCTATAAAA
TAATAGTTGTGTTGCAGGCAATTAACATCTACACTTTTGTTTGGTTGAGATTATACATGC
TTCTAGATAGTGCAGAGTACACAAAGAGATTTTAGAACTTGCAGAAGTATATATCTGTAT
GTTTAATGGTTATTTTGAACTGTTACCATTTAGTTTGTGAGATGCTAATTATGCGTTTAC
TAGGTTTTTTTTCATGCAAACAAAAGAGAACTTAAAGTTATGTTTATCTGGTTTAGGTTA
TGATTTATGTTTGTCCCTTCTAGAGCTTCATGTTATTTATGTTTAATCAAACTCACTAGT
TATGGCATATGCATACCCTTTTTATTAGACCATAATTATCTGGAAGTATTTATTTTTGCT
TTGAACTACAACTTTGATCTTTATAGGATTGAGGTTCAAACAGCCAGAACAGCGCCATGG
GAACCATCATGGTGGTTGAAAAAACTGATTTTCCTCATCCCCCTATCCTTACAAGGCAAG
CAAGGGAAAAGAACAAATAAATCTTGTCTGGCTGAGTGATGCATCTCTTGTTGGGCAGCA
TGTGGCTGAGTGGCATATTGTGCATGAGTGGCATATTGTGCAGAGGAAGAGTATGAGAAG
AAACTTGTGCTTCTCACTCAAACTTTGTCGAACTCTCTTTATGTGCGATTGTGCACTTGT
TGGGTCCTTTTTCTATGCACTTGCACTTGCATAAGTATTCTATTGTGCATTTGTAAAATT
ATTTTGATATGCACTTGTTAGGCCTTGAACCTTAATGTGTGGAGGAATCGATGGATGATG
TATTGTATTTNCATGTGATGT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK371668	1529	0.0	2 - 1498	98	1489 / 1517	None	ABC05172 ABC06188 ABC13360 ABC17513 ABC21924 ABC24067 ABC34989 ABC46334
MLOC_29963.1	1043	0.0	544 - 1043	99	493 / 500	None	ABC13360
MLOC_29963.2	609	0.0	112 - 609	99	491 / 498	None	ABC13360
MLOC_45984.1	775	0.0	1 - 374	98	365 / 374	None	ABC13360
MLOC_45985.1	436	3e-180	4 - 370	98	359 / 367	None	ABC13360
MLOC_35587.1	489	4e-174	155 - 489	99	334 / 335	None	ABC13360
MLOC_1293.1	306	1e-139	4 - 306	96	292 / 303	None	ABC13360
MLOC_1292.1	231	3e-101	1 - 229	96	220 / 229	None	ABC13360
MLOC_1624.1	232	2e-87	1 - 197	96	191 / 198	None	ABC01497 ABC05172 ABC06188 ABC12128 ABC13360 ABC16799 ABC17513 ABC21924 ABC24067 ABC33341 ABC38349 ABC46334
AK249678.1	1547	1e-80	1259 - 1497	90	215 / 240	CUST_3243_PI390587928	ABC03677 ABC06191 ABC13360 ABC17513 ABC21924 ABC24067 ABC34989 ABC49897
MLOC_28160.1	929	5e-69	462 - 678	89	195 / 220	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK249247.1	750	2e-67	474 - 690	88	194 / 220	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK374695	634	3e-66	376 - 601	87	200 / 230	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK362032	681	1e-65	419 - 635	88	193 / 220	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	1e-65	435 - 651	88	193 / 220	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK372031	1366	5e-64	1081 - 1297	87	194 / 222	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
MLOC_61318.1	383	8e-57	197 - 383	88	167 / 189	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
MLOC_28884.1	138	1e-54	1 - 135	96	129 / 135	None	ABC13360