barSeed - Barley Seed Development Database

Probe ABC07851

Source Contig ABC07851

barSeed

Links

Affymetrix Source Sequence (2063 bp)

>ABC07851 2063
CAGCCGGACGTGGGCAAAATCCAAACCGAAAACGAAAAAAACTGCTCTCACAGTCTCACT
CGATCGGCCGCTGACGTCCCTCCCCCGCCGCCGCTCTCACAGTCTCACTCGATCCGCCGC
TGACGTCCCTCCTCCGCCGCCGCGTCCATGGACGGAGGCTAGCCCGAGCAGGTACCGCAC
GTCCCTCCTCCGGTGCCCCCGCCGTTCCCCTTCGACCTCCCGGGGCGCGGGCACCGGCGA
GCCCCGAGGCGGCGGCGCGACTGGCCTGAGCCCGAGCAGGAGCAGCAACTCATCCCTCTG
CCCTCGCCCAAGGCGTTGGCCGTGAGCCCAGCCACCTCCTCGTCCTGAAGGTCCTGCACA
AGCGTGCTCAAGGGACTGTTCACCTAGTTGTGGCAGAGCCGGTTAAGGAGAGGGAGCCCC
GTTTTGTGGCTCGGCTCACACCGACGCGCGCCCCCCTTGCGGCTTCCCCTGCGCCTCCGG
TGACTGCTTCTTCTTCGACTCCGGCATAGAGGAGTAGTAGGATGACTGTCGACAACCTGA
TGGCGTCCCGCTTCGTGTTCCCAATATTGTCGCCGGTGGAGATCGTGGAGCAGCTGTCCC
AGTACGGGATCGCCCCCGACGCGAACCTCCGCCCCGAGAACATCGCCAGTCCGCAGCCCG
ACCTGCTTCCTGGCGTCCTCGCCCGCTTCTTTGACTCCTTCGTCGATGCCCCCGGGGACG
GTGAGGATGGGCTACTAAGGTTCAGCGACCTGGAGGTGCTGGACAACCCAGAGAACCATG
CGGAGGCCATCCAGATGCTGCACCTCTACATCAAGTCGCAGGCCTTCCTCGACTCCATAC
AATTAGAGGACTTCACGCTCTCCGACTTCATCCGCCCCACCCCGCGCCGCATCGTCGAGG
TCCTCAGCGCCCTCATCAACTTCCTCCTCTACAGGGAGGAGAAGCTCACCCTCTTGCAGC
CCATCGTCAGCGAGACCCCCGACTACCACGAGCGCACTCTGGAGCTCAAGGCCAGGATGG
CCCAGCTTCAGAAGGAGATTACGGATCATGAGCTCGCAGAGCAGATGGAGGAGCCCATGG
CCCAGCAGCTGGAAGCAGCCATCAATGTTCTGCAGCAGGAAGTTCAGGTTTACAACAAGC
AGCAACTGGCCCTGCGAGCAAAAGCCGCAGCCATCAGTGACAAGAAAGAGGAGATCCACG
GGAAGATAACCCAGGCTGATTTTGAGTTGACTAAACATGCCCAAGAAAACTCCAGATTGA
TGTCCAAATTAGTAAAGTCCCCAGAAAAAGTAAAGAGGGCCTTGGAAGAGAAGAAATCAG
CCCGCGCTATGTTGAAGGAGTCTGAGAAAATAGCGCTGCAAAATGATCAAGAGAAATCTG
CCGCTTTGGAGATACGCAATAAGGCTCATGAAAAACTGACGAAGCAACACTCTAAAATCC
AGGATGTACATGAACTGCTTGTTGCTGCTAAAACAGTTGAAAAGGAAGTTAAAGCTCGCA
AAGCTAAGCTTAATGATGAAAGTGTATCAGTTATGTCATTCGACGCACAGATTGTTGATT
GGCAAGGAAAAGTACATGAAATGGAGGGGTGTCTCAAGCGGAAAGTGGAAGAAAGGAATC
AAATAATAGCAGATGAAAATCAGAAGCTGGGCGCTTTGAGCTCCGAGATTGAGGGTAAAC
GGCAGCGCCTTGAACCTAGAGAAACGGAAGTAGAGGCAATGACCGCTAAGGCTATGAATT
TGCGTATGGAAGCTGCTTCAGTAAAGACTGCTTCCATGGCAGAACAGCAGAAAATTCACG
CAGAATTCAACAACATTGTGAAGGCGTTCGTCACCTACATGGATAGCATCAATCCTTTAC
TCGAGCAAGTTGAGGAGGTTGACAGGCAATCGGCAGGGGAAGGCGCCTCTGCCCCCGATC
CATCTGCCACTGCCACAACACAAATCACACCCAGTGCCAGTGCAATGAGCAAGAAGTCGA
GGGCTAGGAAAAGGAAATGAGCCGTGTTTCTTGCCTGTGCATGGATGGAAAACCCAGTTC
ATGTCTCTGTTTATGTGTGCATG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK362841	2183	0.0	2 - 2007	99	2004 / 2014	None	ABC07850 ABC07851
MLOC_35176.1	1448	0.0	720 - 1413	92	645 / 699	None	ABC07851
MLOC_8295.1	649	0.0	101 - 593	99	489 / 493	None	ABC07850 ABC07851
MLOC_40166.1	466	0.0	1 - 426	100	426 / 426	None	ABC07851
MLOC_32754.1	516	0.0	1 - 369	98	361 / 369	None	ABC07850 ABC07851
MLOC_64.1	367	0.0	1 - 345	100	345 / 345	None	ABC07851
MLOC_35176.2	625	2e-74	435 - 623	94	177 / 189	None	ABC07851
MLOC_8336.1	1071	3e-102	1 - 281	91	255 / 281	None	ABC07850 ABC07851
MLOC_8335.1	290	5e-100	2 - 269	91	245 / 268	None	ABC07850 ABC07851
MLOC_80022.1	223	6e-99	1 - 197	100	197 / 197	None	ABC07851
MLOC_8336.2	274	1e-96	1 - 265	91	241 / 265	None	ABC07850 ABC07851
MLOC_48727.1	568	6e-94	1 - 188	100	188 / 188	None	ABC07850 ABC07851
AK374695	634	1e-55	92 - 320	84	199 / 237	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_73763.2	1296	1e-55	378 - 606	84	199 / 237	None	ABC07851
MLOC_73763.3	1311	1e-55	260 - 488	84	199 / 237	None	ABC07851
MLOC_73763.1	1506	1e-55	378 - 606	84	199 / 237	None	ABC07851