barSeed - Barley Seed Development Database

Probe ABC13209

Source Contig ABC13209

barSeed

Links

Affymetrix Source Sequence (1275 bp)

>ABC13209 1275
TTCCCTCCCCATCCCCTCCCCGCATCCGCTGCGGCTCCTGCCCTCCCCGCACCCTCCTCC
GGGCCCTCCCGGCACGCGCCGTCGAGGGCTACGCGCTCTTCTTCGACGACCTCCTCTCGC
GGTCCCATGCGTGGGACTGGTTCTCCGACGTGCTCCCCCGCCTCGTGCGCGTCCTCCTCC
GCCTCCCCGCGCTGCTCGAGGACCACTACGCCGCCGCCCGGGCCGCGACCGGGCTCCGCC
TCCTTGGGCCTCAGGACGCGGGCTTCGTGCTCCTAGGCCAGGAGCTCGTCGCTGCGTTGC
TCGCCTGCGCGCTCTTCTACCTGTTCCCCACCGCCGGCCGCGGCGAGGCCCGACTCCCGG
CCATCAATTTTGATGCCTTGTTCTCGGCACTGACTAACAATGCGAGGCAGAGCCAGTAGC
ACAAAGTGAGGTGCATTGCTCACTATTTCGAGAGGGTGACTGCCTCCATGCCTGCCGGTT
TTGTGTCGTTTGAGTGCAAGGTTCTTCCTCGCGGCTCCCACTCGGGCGGAGTTACCTACC
CTGACAGTGATGCCTGGATGAAATCTGGCGTGCCGCTCTGCCCATTCTGGACAATGGGGA
ATTTCGCGTCCAGTGATGCTTCTTCTTCAGTCAAAGAGGCACAAAGGGCATCAGCAACCA
GCTGCTCACTGCCGGATCTAATCTCCGCGCCACCGGTGAACTGCTACCAGGTGCCCAAGG
GCTCAAGGAGGAAGCACTGGGACTCTGAGAGCATCCAGGATTGGTTGGAGACGGCGGAAT
TGGTCGGGCCACGGGTTTACAGCTGCAGCCATTGCCGGAACCACGTCTGCCTCCACGACG
ATATCATCTTTGGTCGAGAAAAAAGAGACGGGAGGACTGGTTCCCTTAACTCGCTGGGGG
TAGCTCGCCGCCTGGTAGCACACGCCCCTTCACATCTGTTTTTCTCAGGAATCGACCCTT
CACATATGACAGCAGCAACACAAAAGCGGCAATGGCAAGAGCATATTGTGCAGAGGAAGA
GGATGTGAAGAAACTTGTGGTTCTCATCCAATCTTTGTGAAACTCTCTTTATATGCGATT
GTGCACTTGTTGGGTCATTTTTCTGTGCACTTGCACTTGCACAAGTATTCAGTTGTGCAC
ATGTAAAATTATTTTGATGTGCCCTTGTTAGGCGTTGAACTTTAATGCGTGGAGTCGGTG
GATGATGTATTGTATTTGATGTGATATGCTACTGAAATGAAATATTCATTTTATTTACAA
AAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK365264	1315	0.0	58 - 1315	100	1258 / 1258	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_35304.1	542	0.0	1 - 529	99	524 / 529	None	ABC13209
MLOC_35304.2	547	0.0	1 - 534	98	524 / 534	None	ABC13209
AK364505	3190	0.0	1390 - 1921	93	496 / 532	CUST_40420_PI390587928	ABC12340 ABC13209 ABC25476
MLOC_35304.4	1555	1e-54	1 - 132	96	127 / 132	None	ABC05172 ABC13209 ABC19962 ABC30081 ABC34978 ABC34989 ABC43152 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_35304.3	1560	1e-54	1 - 132	96	127 / 132	None	ABC05172 ABC13209 ABC19962 ABC30081 ABC34978 ABC34989 ABC43152 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_46774.1	412	0.0	2 - 412	95	392 / 411	None	ABC13209
MLOC_35304.5	1219	3e-139	598 - 866	100	269 / 269	None	ABC13209
MLOC_63074.1	249	6e-127	1 - 247	100	247 / 247	None	ABC13209
AK250016.1	2853	1e-118	2581 - 2851	95	258 / 271	None	ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC30943 ABC34978 ABC34989 ABC38349 ABC44562 ABC44948 ABC45569
AK249247.1	750	5e-118	460 - 747	93	269 / 288	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK374695	634	4e-114	357 - 632	94	259 / 276	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK250595.1	856	8e-111	586 - 854	94	252 / 269	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_68860.4	1007	4e-109	52 - 311	94	245 / 260	None	ABC10932 ABC13209
MLOC_68860.2	1027	4e-109	245 - 504	94	245 / 260	None	ABC10932 ABC13209
MLOC_68860.3	1777	4e-109	245 - 504	94	245 / 260	None	ABC10932 ABC13209
MLOC_50218.1	417	1e-103	177 - 381	100	205 / 205	None	ABC13209
MLOC_28160.1	929	1e-103	448 - 721	92	251 / 274	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK370037	1546	5e-103	1293 - 1544	94	237 / 253	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK362032	681	3e-100	411 - 678	91	245 / 268	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	1e-99	427 - 690	92	242 / 264	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_60076.1	511	1e-99	1 - 243	94	228 / 243	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK359738	1264	1e-98	992 - 1262	91	246 / 271	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK252837.1	2740	2e-96	2479 - 2738	91	245 / 269	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_64313.1	278	3e-95	4 - 259	91	245 / 269	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_30440.1	361	3e-95	92 - 355	90	247 / 273	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK252392.1	1995	3e-90	1761 - 1977	94	205 / 217	None	ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC34978 ABC44948
AK372031	1366	5e-88	1069 - 1308	91	219 / 240	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
MLOC_40685.1	186	2e-81	1 - 186	96	179 / 186	None	ABC13209
MLOC_46576.1	501	2e-76	310 - 501	94	180 / 192	None	ABC13209
MLOC_46576.2	504	2e-76	313 - 504	94	180 / 192	None	ABC13209
MLOC_68860.1	1102	8e-71	245 - 414	95	162 / 170	None	ABC10932 ABC13209
MLOC_7526.1	208	8e-71	9 - 208	91	182 / 200	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334
MLOC_1047.1	146	1e-64	1 - 144	98	141 / 144	None	ABC05171 ABC05172 ABC05174 ABC13209 ABC30081 ABC44566
MLOC_81791.1	171	6e-62	5 - 171	93	155 / 167	CUST_30308_PI390587928	ABC01497 ABC05171 ABC05174 ABC05304 ABC06188 ABC12127 ABC12988 ABC13209 ABC13836 ABC19962 ABC21351 ABC24067 ABC30081 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC44948 ABC45569
MLOC_7574.1	193	2e-61	1 - 183	90	165 / 183	CUST_2502_PI390587928	ABC05171 ABC12988 ABC13209 ABC19962 ABC30081 ABC30943 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569
MLOC_33574.1	258	3e-60	77 - 258	90	168 / 187	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_17578.1	474	5e-58	3 - 173	91	155 / 171	None	ABC13209
MLOC_1048.1	481	1e-53	358 - 481	98	121 / 124	None	ABC13209
AK250846.1	2265	2e-52	2124 - 2263	94	131 / 140	CUST_2110_PI390587928 CUST_8718_PI390587928 CUST_2499_PI390587928	ABC01497 ABC05171 ABC07805 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC50849
MLOC_29781.1	258	2e-52	1 - 149	92	137 / 149	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC33341 ABC34989 ABC38349 ABC44562 ABC46334
MLOC_58288.1	152	8e-51	1 - 152	91	138 / 152	CUST_8721_PI390587928	ABC01497 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC34978 ABC34989 ABC38349 ABC43152 ABC46334