barSeed - Barley Seed Development Database

Probe CUST_3105_PI390587928

Source Contig U35_6589

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3105_PI390587928	Hv_44K_v2	GCTTATGAGAGAAGACAGTTATAGTAGTAGCATTCAGGTTTCATTACTGTGCATTCAAAA	710	GeneList: turquoise MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.104	1.174	1.103	0.905	0.454	0.435
Raw	114.344	178.863	156.069	198.620	35.784	36.977

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359738	1264	2e-24	779 - 838	100	60 / 60	plus	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC	MLOC_30389.1	324	2e-24	184 - 243	100	60 / 60	minus	ABC19962
JLOC1	JLOC1_20111.1	324	8e-25	184 - 243	100	60 / 60	minus
Harvest21	ABC19962	747	3e-25	245 - 304	100	60 / 60	plus	ABC19962
Harvest35	U35_6589	1219	3e-25	711 - 770	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_6589 1219 Hv_44K_v2
GACGGCGACCGGACCTAAAGAAGAAGAAGGCCGTTGCCATCGGCCCCACTCCCGCCCCCG
CACCCTCTGACCCGCTTCGATTTGAGCTGTCCCCGCCGCCGCCGCCGCCGGCGGCGAAGG
ACCTAGCACCGAATCCAGCGGCGACCTCGTTGTGCCCGAGGCCTCCTCCTGCGGGGAGCC
CTGCTGCGACCTCAACCAATCGCCGTGGGACCTCATGGCCGAGCTCGACTTCTCGGATCC
CGAGGCTGCCCATCGGCCTCAAGCTCATCCAGGTATCCGACGGCGGACACGGCACACCAG
CGGCGAGGGTTAGGATATATACGAGGGAGTATGCTGCGCCCCCTCCCTCTGCCAATGGCT
AGTCTGCCATCTAAGATCTCACCGGCCCCTACAAGGTTTTCGGCGCCGGTGCCTTTGCCG
GTAGAGAATTTTGATAATGGATCAACGGAGGAACCCGAGCATCCTAATATGAAGGAAAAT
CCACTGAAGGAATCGGCCCCCTTTCTCCAGGAGGTACATATCTAGTGCTGGGCAGGCTTT
TTTTAGCAATTGAAACTTCTAATTTTAACCTCTACACTTGTGAAGCCTATTTCCAGTGGT
CATCCTACAATGAGCCTGAAAAACAACCGCACATATCATGACTCCAAGATGATATATCCT
GACCTGGACGTTGCATAAGAAAAAGGAAATGTAACCACCTTTTTTTCTTAGCTTATGAGA
GAAGACAGTTATAGTAGTAGCATTCAGGTTTCATTACTGTGCATTCAAAAAAAGCAGTCA
CAAGCACATGACGACCCTACATCATATTTCCACCATTTTCTAAGTAAGAAAAAAAATTTC
TACTGTTTTATCATTGGTTATCGTCGGTGCAATTTTACTAGTTTCCTTGGTCTGAAAGCC
TTACCATCATTTTCTTCTTGCGCGCGGTAATGGCAAGAGCATATTGTGCAGACGAAGAGG
ATGAGAAGAAACTTGTGGTTCTCATCCAATCTTCATGGAACTCTCTTTATGTGTGTTTGT
GCACTTGTTGGGTCCTTTTTTGGTGCGCTTGCACTTGTAGAAGTATTCTCTTGTGCACAT
GTAAAATTATTTTGATGTGCCCTTGTTAGACATTGAAACTTAATGCATGGAGTTGGTGGA
TGATGTATTGTATTTGATGTGATATGCTATTGAAATGAAATATACATTTTATTTGCAAAA
AAAAAAAAAAAAAACTCGA

Homology of Contig U35_6589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None