barSeed - Barley Seed Development Database

Probe ABC13836

Source Contig ABC13836

barSeed

Links

Affymetrix Source Sequence (1121 bp)

>ABC13836 1121
CCATTAGTTGTTCGATCCCTAACCCTAGCCACACCCACATCCTCCTCCATCCCGGCGCCG
CTTTCTTCCTTTCTCTCCTACATCCCGCCGCCGCCCCTACCACTCTTCCATCGCCCCAAT
CAACGGATCATTCATCCCCTTCCCTATCCCTACCCGCTGCAGGAGCGAGCAACAAGCTTG
TTGCCCCGTCATCCTCTCTGGTTCTCCCAATGGGTGCAGCAGGAGTTGCCTATGTGTTTC
ATGGTTACGATGGTTGCGAACGCTGACCGGTAATCTTCGAGGCATGCGCCTGCATCAGTG
TCAAAGATCTGATCCATTACGTCGAGGACGTGCACGTTGACCATCGCCACCATCGACCGC
GCCCCAAGTGGCCTTTCCAGGCGTTCACGGGGCAGCCATGTCGTCCCGCGGCAGAGCCTT
TGCCCTCCACAAGCTTTTCCCTGCAGGTCGACGACAGGGCGTTTTGGGTAATTCACAGCG
CAGGATGTTATCATGGTGAGGTTCCAGTGGAGAGCGGCGGTACAAGGCTTCCGACTGTCG
TCTCCTTCCCGAACACGAGCTCGGCCAGATCCAGTCCCTAATGGCCAAGGATTTACCCCT
CTCTCTTAATCCAGTGTAATATCCATTAATATGATTTACCAATCTGATTCTTCATGTTCT
CATGTATGCATGCATGGAAGTTTGGCCCCGAACTAGATGCGATGTTGGGAGAACTAGTCT
GATGCACGGAAACCATTGATGTTGCACCGCTGCTAACGAAGCCACCACACCGACTTGCCA
AGACTACGAGGTCTCCACCACCCGGTCCAAATTCTGTTGATCCTACGTTCTCGGTTGAAT
TGGTCATGTTAGACTTGATGGATTGACTCACTTCAGCTATCTTTTGAGAATCCACAGGCG
ACAATGGAAAGAGTATATTGTGCAGAGGAAGATGATGAGAAGAAACTTGTGGTTCTCATC
CAATCTTTGTGGAACTCTCTTTATGTGCGATTGTGTACTTGTTGGGTCCTTTTTCTGCGC
ACTTGCACTTGCAGAAGTATTCTGTTGTGCACATGTAAAATTATTTTGATTTGTCCTTGT
TAGGCGTTGAACCTTAATGTGTAGAGTCGGTGGATGATGTA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_26578.1	1409	0.0	398 - 1295	100	898 / 898	None	ABC13836
MLOC_26578.2	1517	0.0	625 - 1481	99	855 / 857	None	ABC13836
MLOC_26578.3	1243	9e-85	551 - 728	99	176 / 178	None	ABC13836
MLOC_25499.3	1058	0.0	7 - 911	82	755 / 919	None	ABC13836
MLOC_25500.3	1141	0.0	76 - 994	81	753 / 928	None	ABC13836
MLOC_25500.1	1126	0.0	76 - 938	82	715 / 877	None	ABC13836
MLOC_25499.6	1088	1e-177	1 - 859	80	698 / 868	None	ABC13836
MLOC_25499.1	948	5e-102	76 - 494	83	356 / 430	None	ABC13836
MLOC_25499.4	898	5e-102	7 - 425	83	356 / 430	None	ABC13836
AK249247.1	750	1e-88	454 - 682	93	212 / 229	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_25499.5	897	5e-87	4 - 426	81	347 / 429	None	ABC13836
AK250595.1	856	2e-86	580 - 807	92	210 / 228	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK365264	1315	7e-86	1043 - 1266	92	207 / 224	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_60076.1	511	7e-86	20 - 246	92	209 / 227	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_28160.1	929	3e-84	444 - 670	92	208 / 227	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK374695	634	1e-83	359 - 585	92	208 / 227	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK370037	1546	2e-82	1293 - 1498	94	193 / 206	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK362032	681	6e-82	411 - 627	92	200 / 217	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	6e-82	427 - 643	92	200 / 217	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK372031	1366	3e-80	1070 - 1289	91	201 / 220	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
MLOC_25499.2	987	2e-77	15 - 277	87	228 / 263	None	ABC13836
MLOC_25500.2	823	2e-77	76 - 338	87	228 / 263	None	ABC13836
MLOC_25500.4	891	2e-77	7 - 269	87	228 / 263	None	ABC13836
MLOC_25500.5	899	6e-77	4 - 256	87	221 / 253	None	ABC13836
AK250016.1	2853	3e-74	2578 - 2804	89	202 / 227	None	ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC30943 ABC34978 ABC34989 ABC38349 ABC44562 ABC44948 ABC45569
MLOC_61318.1	383	4e-73	186 - 383	92	182 / 198	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
AK359738	1264	2e-71	997 - 1215	89	195 / 219	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK252837.1	2740	7e-71	2481 - 2691	90	197 / 220	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
AK252392.1	1995	3e-69	1760 - 1977	89	193 / 218	None	ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC34978 ABC44948
MLOC_30440.1	361	3e-69	94 - 304	89	196 / 220	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_25499.7	976	1e-68	1 - 238	87	206 / 238	None	ABC13836
MLOC_25499.8	1152	7e-66	4 - 373	80	299 / 376	None	ABC13836
MLOC_81791.1	171	2e-61	7 - 169	93	152 / 163	CUST_30308_PI390587928	ABC01497 ABC05171 ABC05174 ABC05304 ABC06188 ABC12127 ABC12988 ABC13209 ABC13836 ABC19962 ABC21351 ABC24067 ABC30081 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC44948 ABC45569
MLOC_33574.1	258	1e-58	74 - 258	89	170 / 191	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_78194.1	127	4e-53	2 - 127	97	122 / 126	None	ABC05171 ABC05174 ABC12127 ABC12128 ABC13836 ABC16799 ABC30081 ABC33341 ABC38349
MLOC_7526.1	208	2e-52	60 - 208	92	137 / 149	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334