barSeed - Barley Seed Development Database

Probe ABC38349

Source Contig ABC38349

barSeed

Links

Affymetrix Source Sequence (546 bp)

>ABC38349 546
TTTTTTTGTTTCATATACCTAATAATTACAAGAGCCAAAATAGATGGGCGCTGCGCGTCG
CAGCGATCTACGATCTAGTAGTCTCCTGTAGATTCTTTTTTCTTTTCACAAGCGTAGAAG
GAAAGACTAATGGGGTAGACGTCTCCTGCTTCATCCTATGGCTATAGAACAGTTACATAT
TAGTTGGACGGTTGGAATATTTTTACTTTCTAGGTTTAACTAGGAGTTGCATCATCTTCT
TCTTGCAGGCGACAATGGCAAGAGCATATTGAGCAGAGGAAGACGATGAGGAGAAACTTG
TGGTTCTTATCCTATCTTTGTGGAACTCTCTTTATGTGTGATTGTGCACTTGTTGGGTCC
TTTTTCTGTGCCCTTGCACTTGTAGAAGTATTCTGTTGTGCACATGTAAAATTATTTTGA
TGTGCCTTTTTTAGGCGTTGAACTTTAATGCGTGGAGTCGTTGGATGATGTATTGTATTT
GATGTGATATGCTACTGAAATGAAATATACATTTTATTTACAATCTTTTAAAAAAAAAAA
AAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_60284.3	2864	0.0	1 - 388	100	388 / 388	CUST_29256_PI390587928	ABC12128 ABC38349 ABC44948
MLOC_60284.2	2258	0.0	1 - 388	100	388 / 388	CUST_29256_PI390587928	ABC05973 ABC12128 ABC38349 ABC44948
MLOC_60284.4	2757	0.0	1 - 388	100	388 / 388	CUST_29256_PI390587928	ABC05973 ABC12128 ABC38349 ABC44948
MLOC_60284.6	1952	0.0	1 - 387	100	387 / 387	CUST_29256_PI390587928	ABC12128 ABC38349 ABC44948
MLOC_60284.8	2345	0.0	1 - 379	100	379 / 379	CUST_29256_PI390587928	ABC05973 ABC38349
MLOC_60076.1	511	9e-152	1 - 412	90	372 / 412	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_28160.1	929	1e-110	428 - 728	91	273 / 301	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK365264	1315	4e-110	1043 - 1315	93	254 / 273	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK249247.1	750	7e-108	456 - 733	92	256 / 278	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK250595.1	856	3e-107	581 - 854	92	253 / 274	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK374695	634	9e-107	359 - 632	92	253 / 274	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK359738	1264	2e-104	973 - 1262	90	262 / 290	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK250016.1	2853	3e-101	2562 - 2851	90	260 / 290	None	ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC30943 ABC34978 ABC34989 ABC38349 ABC44562 ABC44948 ABC45569
AK362032	681	6e-99	411 - 681	91	246 / 271	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK370037	1546	9e-97	1293 - 1544	92	233 / 253	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK366452	692	9e-97	427 - 690	91	240 / 264	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_30440.1	361	6e-94	65 - 361	88	269 / 306	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_64313.1	278	3e-91	4 - 278	89	255 / 288	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
AK252837.1	2740	6e-89	2481 - 2738	90	239 / 267	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_7526.1	208	9e-77	2 - 208	92	190 / 207	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334
MLOC_60284.1	315	4e-70	1 - 144	100	144 / 144	None	ABC05973 ABC38349
MLOC_60284.5	772	4e-70	1 - 144	100	144 / 144	None	ABC05973 ABC38349
MLOC_7574.1	193	6e-69	1 - 190	92	174 / 190	CUST_2502_PI390587928	ABC05171 ABC12988 ABC13209 ABC19962 ABC30081 ABC30943 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569
MLOC_60284.7	369	2e-68	1 - 141	100	141 / 141	None	ABC05973 ABC38349
MLOC_61318.1	383	1e-66	186 - 383	90	179 / 199	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
MLOC_60284.9	1238	4e-65	1 - 135	100	135 / 135	None	ABC05973 ABC38349
MLOC_1624.1	232	6e-64	1 - 231	86	199 / 231	None	ABC01497 ABC05172 ABC06188 ABC12128 ABC13360 ABC16799 ABC17513 ABC21924 ABC24067 ABC33341 ABC38349 ABC46334
MLOC_33574.1	258	2e-59	58 - 258	87	181 / 207	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_81791.1	171	6e-59	5 - 171	92	153 / 167	CUST_30308_PI390587928	ABC01497 ABC05171 ABC05174 ABC05304 ABC06188 ABC12127 ABC12988 ABC13209 ABC13836 ABC19962 ABC21351 ABC24067 ABC30081 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC44948 ABC45569
MLOC_78194.1	127	6e-54	1 - 127	97	123 / 127	None	ABC05171 ABC05174 ABC12127 ABC12128 ABC13836 ABC16799 ABC30081 ABC33341 ABC38349
MLOC_29781.1	258	8e-53	1 - 149	92	137 / 149	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC33341 ABC34989 ABC38349 ABC44562 ABC46334
MLOC_2874.2	1593	3e-52	1437 - 1593	90	142 / 157	CUST_2527_PI390587928	ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC16799 ABC19962 ABC30081 ABC33341 ABC34978 ABC38349 ABC44562 ABC44566 ABC49963
AK250846.1	2265	4e-51	2124 - 2263	93	130 / 140	CUST_2110_PI390587928 CUST_8718_PI390587928 CUST_2499_PI390587928	ABC01497 ABC05171 ABC07805 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC50849
MLOC_58288.1	152	4e-51	1 - 152	91	138 / 152	CUST_8721_PI390587928	ABC01497 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC34978 ABC34989 ABC38349 ABC43152 ABC46334